Gene: AT3G51060 (Arabidopsis thaliana)

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Gene Identifier
AT3G51060
Transcript Identifier
AT3G51060.1
Gene Type
Coding gene
Location
3 : 18964606-18966130 : positive

Family

Gene family
HOM03D000582
(230 genes in 29 species)
specific family
Subfamily
ORTHO03D008224
(30 genes in 24 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Lateral root primordium (LRP) protein-related
Curated Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC)
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Identifiers

Identifier Name
aliasSTY1
aliasSHI RELATED SEQUENCE 1
aliasSRS1
aliasSTYLISH 1
uniprotQ9SD40

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009938NASGene Ontologynegative regulation of gibberellic acid mediated signaling pathway1
GO:0010051IGIGene Ontologyxylem and phloem pattern formation1
GO:0048479IGIGene Ontologystyle development1
GO:0048480IGIGene Ontologystigma development1
GO:0010252IGIGene Ontologyauxin homeostasis1
GO:0045893IDAGene Ontologypositive regulation of transcription, DNA-dependent1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700NASGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0046982IPIGene Ontologyprotein heterodimerization activity1
GO:0003677IDAGene OntologyDNA binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, ISSGene Ontologynucleus1 2 3

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007818Protein of unknown function DUF702
IPR006510Zinc finger, lateral root primordium type 1
IPR006511Lateral Root Primordium type 1, C-terminal

Mapman id Description
27.3.11RNA.regulation of transcription.C2H2 zinc finger family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_10STY1Not available941 genes in 10 species
Matrix_451STY1Not available589 genes in 10 species

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DatabaseType
PlnTFDBSRS
PlantTFDBSRS