Gene: AT3G48670 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G48670
Transcript Identifier
AT3G48670.1
Gene Type
Coding gene
Location
3 : 18031240-18033615 : positive

Family

Gene family
HOM03D000512
(253 genes in 29 species)
specific family
Subfamily
ORTHO03D000673
(71 genes in 28 species)
specific family

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Descriptions

Description
XH/XS domain-containing protein
Curated Summary
Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.
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Identifiers

Identifier Name
aliasIDN2
aliasINVOLVED IN DE NOVO 2
aliasRNA-DIRECTED DNA METHYLATION 12
aliasRDM12

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0046686IEPGene Ontologyresponse to cadmium ion1
GO:0006306IGI, IMPGene OntologyDNA methylation1 2
GO:0006342IGIGene Ontologychromatin silencing1
GO:0031047IEAInterProgene silencing by RNA
GO:0016458IEAPLAZA Homologygene silencingHOM03D000512
GO:0048519IEAPLAZA Homologynegative regulation of biological processHOM03D000512
GO:0009892IEAPLAZA Homologynegative regulation of metabolic processHOM03D000512
GO:0010605IEAPLAZA Homologynegative regulation of macromolecule metabolic processHOM03D000512
GO:0010629IEAPLAZA Homologynegative regulation of gene expressionHOM03D000512

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005380XS domain
IPR005381Zinc finger-XS domain
IPR005379Uncharacterised domain XH

Mapman id Description
27.3.67RNA.regulation of transcription.putative transcription regulator
No SignalP domains detected for this gene.