Gene: AT3G44750 (Arabidopsis thaliana)

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Gene Identifier
AT3G44750
Transcript Identifier
AT3G44750.1
Gene Type
Coding gene
Location
3 : 16298045-16299585 : positive

Family

Gene family
HOM03D001459
(109 genes in 30 species)
specific family
Subfamily
ORTHO03D034617
(4 genes in 4 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
histone deacetylase 3
Curated Summary
Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.
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Identifiers

Identifier Name
aliashistone deacetylase 3
aliasHDT1
aliasHDA3
aliasHISTONE DEACETYLASE 2A
aliasHD2A
aliasATHD2A
uniprotQ9FVE6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009944IMPUniProtpolarity specification of adaxial/abaxial axis1 2 3 4 5 6 7 8 9 10
GO:0009294IMPUniProtDNA mediated transformation1 2 3 4 5 6 7 8 9 10
GO:0000478RCAGene Ontologyendonucleolytic cleavage involved in rRNA processing1
GO:0001510RCAGene OntologyRNA methylation1
GO:0006164RCAGene Ontologypurine nucleotide biosynthetic process1
GO:0009220RCAGene Ontologypyrimidine ribonucleotide biosynthetic process1
GO:0010162IEPUniProtseed dormancy process1 2 3 4 5 6 7 8 9 10
GO:0016568IEAUniProtchromatin modification1 2 3 4 5 6 7 8 9
GO:0006355IEAUniProtregulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676ISSGene Ontologynucleic acid binding1
GO:0008270ISSGene Ontologyzinc ion binding1
GO:0004407ISSGene Ontologyhistone deacetylase activity1
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7 8 9
GO:0016787IEAUniProthydrolase activity1 2 3 4 5 6 7 8 9

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005730IDA, TAS, UniProtnucleolus1 2 3 4 5 6 7 8 9 10 11

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007087Zinc finger, C2H2

Mapman id Description
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.
DatabaseType
PlantTFDBC2H2