PLAZA 3.0 Dicots gene overview : AT3G24550

Gene: AT3G24550 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G24550
Transcript Identifier: AT3G24550.1
Gene Type: Coding gene
Location: 3 : 8960411-8963303 : positive

Family

Gene family: HOM03D000003
(5194 genes in 29 species)
specific family
Subfamily: ORTHO03D000447
(87 genes in 25 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: proline extensin-like receptor kinase 1

Curated Summary: Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).

Identifiers

Identifier	Name
alias	PERK1
alias	proline-rich extensin-like receptor kinase 1
alias	ATPERK1
uniprot	Q9LV48

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	ISS, IEA	Gene Ontology	protein phosphorylation	1
GO:0009611	ISS	UniProt	response to wounding	1 2 3 4 5 6 7 8 9
GO:0009620	ISS	UniProt	response to fungus	1 2 3 4 5 6 7 8 9
GO:0046777	IDA	UniProt	protein autophosphorylation	1 2 3 4 5 6 7 8 9
GO:0051510	RCA	Gene Ontology	regulation of unidimensional cell growth	1
GO:0052541	RCA	Gene Ontology	plant-type cell wall cellulose metabolic process	1
GO:0052546	RCA	Gene Ontology	cell wall pectin metabolic process	1
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03D000003
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03D000003
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03D000003
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03D000003
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03D000003
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000003
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000003
GO:0016310	IEA	PLAZA Homology	phosphorylation	HOM03D000003
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000003
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03D000003
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000003
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03D000003
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03D000003
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03D000003
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03D000003

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	ISS, IEA	Gene Ontology	protein kinase activity	1
GO:0005524	IEA, ISS	UniProt	ATP binding	1 2 3 4 5 6 7 8 9
GO:0004674	IDA, IEA,	UniProt	protein serine/threonine kinase activity	1 2 3 4 5 6 7 8 9
GO:0016772	IEA	InterPro	transferase activity, transferring phosphorus-containing groups
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000003
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000003
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000003
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000003
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000003
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000003
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000003
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000003
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000003
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03D000003
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000003
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000003
GO:0016301	IEA	PLAZA Homology	kinase activity	HOM03D000003
GO:0016773	IEA	PLAZA Homology	phosphotransferase activity, alcohol group as acceptor	HOM03D000003
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000003
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000003
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000003
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000003
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000003
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000003
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000003
GO:0016740	IEA	PLAZA Homology	transferase activity	HOM03D000003
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000003

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IDA, ISMISS,	UniProt	plasma membrane	1 2 3 4 5 6 7 8 9 10 11
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011009	Protein kinase-like domain
IPR000719	Protein kinase domain
IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain
IPR008271	Serine/threonine-protein kinase, active site
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
IPR017441	Protein kinase, ATP binding site

Mapman id	Description
30.2.22	signalling.receptor kinases.proline extensin like

No SignalP domains detected for this gene.