PLAZA 3.0 Dicots gene overview : AT3G19000

Gene: AT3G19000 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G19000
Transcript Identifier: AT3G19000.1
Gene Type: Coding gene
Location: 3 : 6553668-6554987 : negative

Family

Gene family: HOM03D000012
(2924 genes in 31 species)
specific family
Subfamily: ORTHO03D005506
(34 genes in 22 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

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Identifiers

Identifier	Name

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000023	RCA	Gene Ontology	maltose metabolic process	1
GO:0019252	RCA	Gene Ontology	starch biosynthetic process	1
GO:0043085	RCA	Gene Ontology	positive regulation of catalytic activity	1
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000012
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000012
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000012

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016706	ISS, IEA	Gene Ontology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1
GO:0005506	IEA	InterPro	iron ion binding
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0051213	IEA	PLAZA Homology	dioxygenase activity	HOM03D000012
GO:0016705	IEA	PLAZA Homology	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	HOM03D000012
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000012

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISM	Gene Ontology	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR026992	Non-haem dioxygenase N-terminal domain
IPR002283	Isopenicillin N synthase
IPR027443	Isopenicillin N synthase-like
IPR005123	Oxoglutarate/iron-dependent dioxygenase

Mapman id	Description
21.2	redox.ascorbate and glutathione

No SignalP domains detected for this gene.