Gene: AT3G16770 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G16770
Transcript Identifier
AT3G16770.1
Gene Type
Coding gene
Location
3 : 5705784-5706768 : positive

Family

Gene family
HOM03D000011
(2954 genes in 31 species)
specific family
Subfamily
ORTHO03D007339
(31 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
ethylene-responsive element binding protein
Curated Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.
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Identifiers

Identifier Name
aliasATEBP
aliasethylene-responsive element binding protein
aliasRELATED TO AP2 3
aliasEBP
aliasETHYLENE RESPONSE FACTOR 72
aliasERF72
aliasRAP2.3
uniprotP42736

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0051707IEPUniProtresponse to other organism1 2 3 4 5 6 7 8
GO:0008219IMPUniProtcell death1 2 3 4 5 6 7 8
GO:0010286IMPUniProtheat acclimation1 2 3 4 5 6 7 8
GO:0045893IDAUniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8
GO:0009735IEPUniProtresponse to cytokinin1 2 3 4 5 6 7 8
GO:0009723IEPGene Ontologyresponse to ethylene1
GO:0009753IEPUniProtresponse to jasmonic acid1 2 3 4 5 6 7 8
GO:0009873TASUniProtethylene mediated signaling pathway1 2 3 4 5 6 7 8
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000011
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000011
GO:0010467IEAPLAZA Homologygene expressionHOM03D000011
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000011
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000011
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000011
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000011
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000011
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000011
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000011
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000011
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000011
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000011
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000011
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000011
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000011
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000011
GO:0009987IEAPLAZA Homologycellular processHOM03D000011
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000011
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000011
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000011
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000011
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000011
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000011
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03D000011
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000011
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000011
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000011
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000011
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000011
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03D000011
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03D000011
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000011
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000011
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000011
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000011
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000011
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000011
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000011
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000011
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000011
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000011
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03D000011

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IDA, ISS, TASIEA, UniProtDNA binding1 2 3 4 5 6 7 8 9 10
GO:0003700IDA, IMP, ISS, TASIEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11
GO:0005515IPIGene Ontologyprotein binding1
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000011
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000011
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000011
GO:0005488IEAPLAZA HomologybindingHOM03D000011
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000011

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMTAS, UniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6 7 8
GO:0005737IDAUniProtcytoplasm1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001471AP2/ERF domain
IPR016177DNA-binding domain

Mapman id Description
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_234RAP2.3Not available3266 genes in 10 species
Matrix_288RAP2.3Not available2746 genes in 10 species
Matrix_363RAP2.3Not available2838 genes in 10 species

View full overview
DatabaseType
PlnTFDBAP2-EREBP
PlantTFDBERF