Gene: AT3G13490 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G13490
Transcript Identifier
AT3G13490.1
Gene Type
Coding gene
Location
3 : 4395984-4399302 : negative

Family

Gene family
HOM03D001316
(118 genes in 31 species)
specific family
Subfamily
ORTHO03D011217
(24 genes in 23 species)
specific family

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Descriptions

Description
Lysyl-tRNA synthetase, class II
Curated Summary
Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.
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Identifiers

Identifier Name
aliasOVULE ABORTION 5
aliasATKRS-2
aliasARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2
aliasOVA5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006418ISS, IEAGene OntologytRNA aminoacylation for protein translation1
GO:0048481IMP, RCAGene Ontologyovule development1 2
GO:0006364RCAGene OntologyrRNA processing1
GO:0006399RCAGene OntologytRNA metabolic process1
GO:0009658RCAGene Ontologychloroplast organization1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0016226RCAGene Ontologyiron-sulfur cluster assembly1
GO:0006430IEAInterProlysyl-tRNA aminoacylation

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004812ISS, IEAGene Ontologyaminoacyl-tRNA ligase activity1
GO:0005524ISS, IEAGene OntologyATP binding1
GO:0000166IEAInterPronucleotide binding
GO:0004824IEAInterProlysine-tRNA ligase activity
GO:0003676IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISS, IEAGene Ontologycytoplasm1
GO:0005739IDAGene Ontologymitochondrion1
GO:0009507IDAGene Ontologychloroplast1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002313Lysine-tRNA ligase, class II
IPR018149Lysyl-tRNA synthetase, class II, C-terminal
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR006195Aminoacyl-tRNA synthetase, class II
IPR012340Nucleic acid-binding, OB-fold
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)

Mapman id Description
29.1.6protein.aa activation.lysine-tRNA ligase
No SignalP domains detected for this gene.