Gene: AT3G12550 (Arabidopsis thaliana)

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Gene Identifier
AT3G12550
Transcript Identifier
AT3G12550.1
Gene Type
Coding gene
Location
3 : 3978669-3981372 : positive

Family

Gene family
HOM03D000512
(253 genes in 29 species)
specific family
Subfamily
ORTHO03D000673
(71 genes in 28 species)
specific family

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Descriptions

Description
XH/XS domain-containing protein
Curated Summary
Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).
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Identifiers

Identifier Name
aliasfactor of DNA methylation 3
aliasFDM3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0080188IGIGene OntologyRNA-directed DNA methylation1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0010050RCAGene Ontologyvegetative phase change1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0016246RCAGene OntologyRNA interference1
GO:0031048RCAGene Ontologychromatin silencing by small RNA1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1
GO:0031047IEAInterProgene silencing by RNA
GO:0016458IEAPLAZA Homologygene silencingHOM03D000512
GO:0048519IEAPLAZA Homologynegative regulation of biological processHOM03D000512
GO:0009892IEAPLAZA Homologynegative regulation of metabolic processHOM03D000512
GO:0010605IEAPLAZA Homologynegative regulation of macromolecule metabolic processHOM03D000512
GO:0010629IEAPLAZA Homologynegative regulation of gene expressionHOM03D000512

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005379Uncharacterised domain XH
IPR005380XS domain
IPR005381Zinc finger-XS domain

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.