Gene: AT3G12500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G12500
Transcript Identifier
AT3G12500.1
Gene Type
Coding gene
Location
3 : 3962501-3963984 : negative

Family

Gene family
HOM03D000239
(447 genes in 29 species)
specific family
Subfamily
ORTHO03D001728
(47 genes in 26 species)
specific family

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Descriptions

Description
basic chitinase
Curated Summary
encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
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Identifiers

Identifier Name
aliasPR3
aliasHCHIB
aliasCHI-B
aliasB-CHI
aliasATHCHIB
aliasPATHOGENESIS-RELATED 3
aliasPR-3
aliasbasic chitinase
uniprotP19171

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0050832IEA, IDAUniProtdefense response to fungus1 2 3 4 5 6 7 8 9 10 11
GO:0046686IEPGene Ontologyresponse to cadmium ion1
GO:0010167RCAGene Ontologyresponse to nitrate1
GO:0015706RCAGene Ontologynitrate transport1
GO:0009871IGIGene Ontologyjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1
GO:0006032IEAUniProtchitin catabolic process1 2 3 4 5 6 7 8 9 10
GO:0016998IEAUniProtcell wall macromolecule catabolic process1 2 3 4 5 6 7 8 9 10
GO:0031640IEAUniProtkilling of cells of other organism1 2 3 4 5 6 7 8 9 10
GO:0009626IEAUniProtplant-type hypersensitive response1 2 3 4 5 6 7 8 9 10
GO:0000272IEAUniProtpolysaccharide catabolic process1 2 3 4 5 6 7 8 9 10
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000239
GO:0006030IEAPLAZA Homologychitin metabolic processHOM03D000239
GO:1901575IEAPLAZA Homologyorganic substance catabolic processHOM03D000239
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000239
GO:0046348IEAPLAZA Homologyamino sugar catabolic processHOM03D000239
GO:0071554IEAPLAZA Homologycell wall organization or biogenesisHOM03D000239
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000239
GO:1901565IEAPLAZA Homologyorganonitrogen compound catabolic processHOM03D000239
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03D000239
GO:0044036IEAPLAZA Homologycell wall macromolecule metabolic processHOM03D000239
GO:0006040ISOPLAZA Integrative Orthologyamino sugar metabolic processOS03G30470
GO:0006026IEAPLAZA Homologyaminoglycan catabolic processHOM03D000239
GO:1901136IEAPLAZA Homologycarbohydrate derivative catabolic processHOM03D000239
GO:0009056IEAPLAZA Homologycatabolic processHOM03D000239
GO:1901135IEAPLAZA Homologycarbohydrate derivative metabolic processHOM03D000239
GO:0009057IEAPLAZA Homologymacromolecule catabolic processHOM03D000239
GO:0006022IEAPLAZA Homologyaminoglycan metabolic processHOM03D000239
GO:1901072IEAPLAZA Homologyglucosamine-containing compound catabolic processHOM03D000239
GO:1901071IEAPLAZA Homologyglucosamine-containing compound metabolic processHOM03D000239
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03D000239

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004568IEA, IDA, ISSUniProtchitinase activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0008061IEAUniProtchitin binding1 2 3 4 5 6 7 8 9 10
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000239
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000239
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000239
GO:0016231ISOPLAZA Integrative Orthologybeta-N-acetylglucosaminidase activityOS03G30470
GO:0008843ISOPLAZA Integrative Orthologyendochitinase activityOS03G30470

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1
GO:0005773IEA, IDAUniProtvacuole1 2 3 4 5 6 7 8 9 10 11
GO:0005774IDAGene Ontologyvacuolar membrane1
GO:0005829IDAGene Ontologycytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000726Glycoside hydrolase, family 19, catalytic
IPR023346Lysozyme-like domain
IPR001002Chitin-binding, type 1
IPR018371Chitin-binding, type 1, conserved site

Mapman id Description
20.1stress.biotic
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network