PLAZA 3.0 Dicots gene overview : AT3G09650

Gene: AT3G09650 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G09650
Transcript Identifier: AT3G09650.1
Gene Type: Coding gene
Location: 3 : 2958704-2961040 : positive

Family

Gene family: HOM03D000002
(6445 genes in 31 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Tetratricopeptide repeat (TPR)-like superfamily protein

Curated Summary: RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.

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Identifiers

Identifier	Name
alias	CRM3
alias	HCF152
alias	HIGH CHLOROPHYLL FLUORESCENCE 152
uniprot	Q9SF38

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006397	IMP	UniProt	mRNA processing	1 2 3 4 5
GO:0000023	RCA	Gene Ontology	maltose metabolic process	1
GO:0019252	RCA	Gene Ontology	starch biosynthetic process	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003729	IDA	UniProt	mRNA binding	1 2 3 4 5
GO:0000166	IEA	UniProt	nucleotide binding	1 2 3 4
GO:0005515	IEA	PLAZA Homology	protein binding	HOM03D000002
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000002

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISM	Gene Ontology	chloroplast	1
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat

Mapman id	Description
27.1	RNA.processing

No SignalP domains detected for this gene.