Gene: AT2G44950 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G44950
Transcript Identifier
AT2G44950.1
Gene Type
Coding gene
Location
2 : 18542602-18548247 : negative

Family

Gene family
HOM03D002033
(84 genes in 31 species)
specific family
Subfamily
ORTHO03D013341
(17 genes in 15 species)
specific family

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Descriptions

Description
histone mono-ubiquitination 1
Curated Summary
The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.
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Identifiers

Identifier Name
aliasHUB1
aliashistone mono-ubiquitination 1
aliasREDUCED DORMANCY 4
aliasRDO4
uniprotQ8RXD6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010162IMP, RCA, UniProtseed dormancy process1 2 3 4 5 6 7 8
GO:0010390IMPUniProthistone monoubiquitination1 2 3 4 5 6 7
GO:0006513IDAGene Ontologyprotein monoubiquitination1
GO:0009965IMPUniProtleaf morphogenesis1 2 3 4 5 6 7
GO:0010389IMPUniProtregulation of G2/M transition of mitotic cell cycle1 2 3 4 5 6 7
GO:0016049IMP, RCA, UniProtcell growth1 2 3 4 5 6 7 8
GO:0048505IMPGene Ontologyregulation of timing of cell differentiation1
GO:0051301IMP, RCA, UniProtcell division1 2 3 4 5 6 7 8
GO:0010228IMP, RCA, UniProtvegetative to reproductive phase transition of meristem1 2 3 4 5 6 7 8
GO:0033523IMPUniProthistone H2B ubiquitination1 2 3 4 5 6 7
GO:0009817IMPUniProtdefense response to fungus, incompatible interaction1 2 3 4 5 6 7
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0003002RCAGene Ontologyregionalization1
GO:0006396RCAGene OntologyRNA processing1
GO:0006406RCAGene OntologymRNA export from nucleus1
GO:0007062RCAGene Ontologysister chromatid cohesion1
GO:0007155RCAGene Ontologycell adhesion1
GO:0007346RCAGene Ontologyregulation of mitotic cell cycle1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845RCAGene Ontologyseed germination1
GO:0009880RCAGene Ontologyembryonic pattern specification1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010014RCAGene Ontologymeristem initiation1
GO:0010072RCAGene Ontologyprimary shoot apical meristem specification1
GO:0010074RCAGene Ontologymaintenance of meristem identity1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0010431RCAGene Ontologyseed maturation1
GO:0010564RCAGene Ontologyregulation of cell cycle process1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0016926RCAGene Ontologyprotein desumoylation1
GO:0019915RCAGene Ontologylipid storage1
GO:0033043RCAGene Ontologyregulation of organelle organization1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0048366RCAGene Ontologyleaf development1
GO:0048449RCAGene Ontologyfloral organ formation1
GO:0048589RCAGene Ontologydevelopmental growth1
GO:0048825RCAGene Ontologycotyledon development1
GO:0050665RCAGene Ontologyhydrogen peroxide biosynthetic process1
GO:0050826RCAGene Ontologyresponse to freezing1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEA, ISSUniProtzinc ion binding1 2 3 4 5 6 7
GO:0004842IDAUniProtubiquitin-protein ligase activity1 2 3 4 5 6 7
GO:0042803IPIGene Ontologyprotein homodimerization activity1
GO:0005515IPI, IEAGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8
GO:0005739IDAUniProtmitochondrion1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001841Zinc finger, RING-type
IPR017907Zinc finger, RING-type, conserved site

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.