Gene: AT2G41100 (Arabidopsis thaliana)

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Gene Identifier
AT2G41100
Transcript Identifier
AT2G41100.1
Gene Type
Coding gene
Location
2 : 17138131-17139406 : positive

Family

Gene family
HOM03D000053
(1435 genes in 31 species)
specific family
Subfamily
ORTHO03D046117
(3 genes in 3 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description
Calcium-binding EF hand family protein
Curated Summary
encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.
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Identifiers

Identifier Name
aliasTCH3
aliasARABIDOPSIS THALIANA CALMODULIN LIKE 4
aliasATCAL4
aliasTOUCH 3
uniprotP25071

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009266NASGene Ontologyresponse to temperature stimulus1
GO:0006612RCAGene Ontologyprotein targeting to membrane1
GO:0009611RCAGene Ontologyresponse to wounding1
GO:0009612IEP, RCAGene Ontologyresponse to mechanical stimulus1 2
GO:0009646IEP, RCA, UniProtresponse to absence of light1 2 3 4 5 6 7 8 9
GO:0010200RCAGene Ontologyresponse to chitin1
GO:0010363RCAGene Ontologyregulation of plant-type hypersensitive response1
GO:0019722RCAGene Ontologycalcium-mediated signaling1
GO:0043069RCAGene Ontologynegative regulation of programmed cell death1
GO:0009652IEPUniProtthigmotropism1 2 3 4 5 6 7 8

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IPIGene Ontologyprotein binding1
GO:0005509IDA, IEA, UniProtcalcium ion binding1 2 3 4 5 6 7 8
GO:0043169IEAPLAZA Homologycation bindingHOM03D000053
GO:0005488IEAPLAZA HomologybindingHOM03D000053
GO:0043167IEAPLAZA Homologyion bindingHOM03D000053
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D000053

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISMGene Ontologymitochondrion1
GO:0005774IDAUniProtvacuolar membrane1 2 3 4 5 6 7 8
GO:0009506IDAUniProtplasmodesma1 2 3 4 5 6 7 8

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002048EF-hand domain
IPR018247EF-Hand 1, calcium-binding site
IPR011992EF-hand domain pair

Mapman id Description
30.3signalling.calcium
No SignalP domains detected for this gene.