PLAZA 3.0 Dicots gene overview : AT2G41100

Gene: AT2G41100 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G41100
Transcript Identifier: AT2G41100.1
Gene Type: Coding gene
Location: 2 : 17138131-17139406 : positive

Family

Gene family: HOM03D000053
(1435 genes in 31 species)
specific family
Subfamily: ORTHO03D046117
(3 genes in 3 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: Calcium-binding EF hand family protein

Curated Summary: encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.

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Identifiers

Identifier	Name
alias	TCH3
alias	ARABIDOPSIS THALIANA CALMODULIN LIKE 4
alias	ATCAL4
alias	TOUCH 3
uniprot	P25071

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009266	NAS	Gene Ontology	response to temperature stimulus	1
GO:0006612	RCA	Gene Ontology	protein targeting to membrane	1
GO:0009611	RCA	Gene Ontology	response to wounding	1
GO:0009612	IEP, RCA	Gene Ontology	response to mechanical stimulus	1 2
GO:0009646	IEP, RCA,	UniProt	response to absence of light	1 2 3 4 5 6 7 8 9
GO:0010200	RCA	Gene Ontology	response to chitin	1
GO:0010363	RCA	Gene Ontology	regulation of plant-type hypersensitive response	1
GO:0019722	RCA	Gene Ontology	calcium-mediated signaling	1
GO:0043069	RCA	Gene Ontology	negative regulation of programmed cell death	1
GO:0009652	IEP	UniProt	thigmotropism	1 2 3 4 5 6 7 8

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0005509	IDA, IEA,	UniProt	calcium ion binding	1 2 3 4 5 6 7 8
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000053
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000053
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000053
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000053

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	ISM	Gene Ontology	mitochondrion	1
GO:0005774	IDA	UniProt	vacuolar membrane	1 2 3 4 5 6 7 8
GO:0009506	IDA	UniProt	plasmodesma	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002048	EF-hand domain
IPR018247	EF-Hand 1, calcium-binding site
IPR011992	EF-hand domain pair

Mapman id	Description
30.3	signalling.calcium

No SignalP domains detected for this gene.