Gene: AT2G38560 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G38560
Transcript Identifier
AT2G38560.1
Gene Type
Coding gene
Location
2 : 16134802-16136319 : positive

Family

Gene family
HOM03D001513
(106 genes in 31 species)
specific family
Subfamily
ORTHO03D002095
(44 genes in 31 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
transcript elongation factor IIS
Curated Summary
Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
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Identifiers

Identifier Name
aliasTFIIS
aliasREDUCED DORMANCY 2
aliasRDO2
aliastranscript elongation factor IIS

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006354ISSGene OntologyDNA-dependent transcription, elongation1
GO:0006355ISS, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009910IMPGene Ontologynegative regulation of flower development1
GO:0010162IMP, RCAGene Ontologyseed dormancy process1 2
GO:0034243IMPGene Ontologyregulation of transcription elongation from RNA polymerase II promoter1
GO:0000394RCAGene OntologyRNA splicing, via endonucleolytic cleavage and ligation1
GO:0006366RCAGene Ontologytranscription from RNA polymerase II promoter1
GO:0007062RCAGene Ontologysister chromatid cohesion1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845IMP, RCAGene Ontologyseed germination1 2
GO:0009880RCAGene Ontologyembryonic pattern specification1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010072RCAGene Ontologyprimary shoot apical meristem specification1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010431RCAGene Ontologyseed maturation1
GO:0010564RCAGene Ontologyregulation of cell cycle process1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0048366RCAGene Ontologyleaf development1
GO:0048825RCAGene Ontologycotyledon development1
GO:0050826RCAGene Ontologyresponse to freezing1
GO:0051301RCAGene Ontologycell division1
GO:0009739IMPGene Ontologyresponse to gibberellin stimulus1
GO:0006351IEAInterProtranscription, DNA-templated
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D001513

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0008270IEAInterProzinc ion binding
GO:0003676IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, ISS, IEAGene Ontologynucleus1 2 3
GO:0005829RCAGene Ontologycytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003618Transcription elongation factor S-II, central domain
IPR006289Transcription elongation factor, TFIIS
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR017923Transcription factor IIS, N-terminal
IPR001222Zinc finger, TFIIS-type
IPR017890Transcription elongation factor S-IIM

Mapman id Description
29.2.4protein.synthesis.elongation
No SignalP domains detected for this gene.