Gene: AT2G31970 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G31970
Transcript Identifier
AT2G31970.1
Gene Type
Coding gene
Location
2 : 13600657-13608815 : positive

Family

Gene family
HOM03D006165
(35 genes in 29 species)
specific family

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Descriptions

Description
DNA repair-recombination protein (RAD50)
Curated Summary
Encodes the Arabidopsis RAD50 homologue. It is involved in double strand break repair. Component of the meiotic recombination complex that processes meiotic double-strand-breaks to produce single-stranded DNA ends, which act in the homology search and recombination. Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1.
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Identifiers

Identifier Name
aliasRAD50
aliasATRAD50
uniprotQ9SL02

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006281ISS, IEAGene OntologyDNA repair1
GO:0006302IMPUniProtdouble-strand break repair1 2 3 4 5 6 7 8
GO:0000723IMPGene Ontologytelomere maintenance1
GO:0006312IMP, RCA, UniProtmitotic recombination1 2 3 4 5 6 7 8 9
GO:0016233IMPUniProttelomere capping1 2 3 4 5 6 7 8
GO:0000226RCAGene Ontologymicrotubule cytoskeleton organization1
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0006396RCAGene OntologyRNA processing1
GO:0006606RCAGene Ontologyprotein import into nucleus1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0007346RCAGene Ontologyregulation of mitotic cell cycle1
GO:0009560RCAGene Ontologyembryo sac egg cell differentiation1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845RCAGene Ontologyseed germination1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010048RCAGene Ontologyvernalization response1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0050826RCAGene Ontologyresponse to freezing1
GO:0007126IEAUniProtmeiosis1 2 3 4 5 6 7
GO:0090305IEAUniProtnucleic acid phosphodiester bond hydrolysis1 2 3 4 5 6 7

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004518IEAUniProtnuclease activity1 2 3 4 5 6 7
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005737IDAUniProtcytoplasm1 2 3 4 5 6 7 8
GO:0030870TAS, IEA, UniProtMre11 complex1 2 3 4 5 6 7 8
GO:0000781IEAUniProtchromosome, telomeric region1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013134Zinc hook, Rad50
IPR004584DNA repair protein Rad50, eukaryotes
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR007517Rad50 zinc hook

Mapman id Description
28.2DNA.repair
No SignalP domains detected for this gene.