PLAZA 3.0 Dicots gene overview : AT2G28190

Gene: AT2G28190 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G28190
Transcript Identifier: AT2G28190.1
Gene Type: Coding gene
Location: 2 : 12014548-12016303 : positive

Family

Gene family: HOM03D001176
(130 genes in 30 species)
specific family
Subfamily: ORTHO03D004812
(35 genes in 30 species)
specific family

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Descriptions

Description: copper/zinc superoxide dismutase 2

Curated Summary: Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS. Overexpression of a miR398-resistant form of CSD2 leads to more dramatic improvements in stress (hight light, Cu2+ and methyl viologen) tolerance than overexpression of wild-type CSD2.

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Identifiers

Identifier	Name
alias	CSD2
alias	CZSOD2
alias	COPPER/ZINC SUPEROXIDE DISMUTASE 2
alias	copper/zinc superoxide dismutase 2
uniprot	O78310

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0019430	IBA, IC,	UniProt	removal of superoxide radicals	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0006979	IDA	Gene Ontology	response to oxidative stress	1
GO:0046688	IEP	UniProt	response to copper ion	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0010039	IEP	UniProt	response to iron ion	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0034599	IEP	Gene Ontology	cellular response to oxidative stress	1
GO:0035195	IEP	UniProt	gene silencing by miRNA	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0071472	IEP	UniProt	cellular response to salt stress	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0071329	IEP	UniProt	cellular response to sucrose stimulus	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009407	RCA	Gene Ontology	toxin catabolic process	1
GO:0009416	IEP	Gene Ontology	response to light stimulus	1
GO:0071457	IEP	UniProt	cellular response to ozone	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0071484	IEP	UniProt	cellular response to light intensity	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0071493	IEP	UniProt	cellular response to UV-B	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0006801	IEA	InterPro	superoxide metabolic process
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0072593	IEA	PLAZA Homology	reactive oxygen species metabolic process	HOM03D001176

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005507	IBA	UniProt	copper ion binding	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0008270	IBA	UniProt	zinc ion binding	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0004784	IEA, IDA	UniProt	superoxide dismutase activity	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0046872	IEA	InterPro	metal ion binding
GO:0016721	IEA	PLAZA Homology	oxidoreductase activity, acting on superoxide radicals as acceptor	HOM03D001176

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1 2
GO:0009579	IDA	UniProt	thylakoid	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0048046	IDA	UniProt	apoplast	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4 5 6 7 8 9 10 11 12 13 14

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR018152	Superoxide dismutase, copper/zinc, binding site
IPR001424	Superoxide dismutase, copper/zinc binding domain
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone

Mapman id	Description
21.6	redox.dismutases and catalases

No SignalP domains detected for this gene.