Gene: AT2G28056 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G28056
Transcript Identifier
AT2G28056.1
Gene Type
RNA gene
Location
2 : 11941661-11943604 : negative

Family

No gene family defined for this gene.

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Descriptions

Description
MIR172/MIR172A; miRNA
Curated Summary
Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AGAAUCUUGAUGAUGCUGCAU. Pri-mRNA coordinates for MIR172a (converted to TAIR10 based on PMID19304749): Chr2: 11943611-11941515 (reverse), length: 2097 bp; exon coordinates: exon 1: 11943611 to 11942837, exon 2: 11942688 to 11942600, exon 3: 11941905 to 11941515; mature miRNA and miRNA* are located on exon 1.

Identifiers

Identifier Name
aliasMIR172A
aliasmicroRNA172A
aliasMICRORNA 172
aliasMIR172

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Explore

  • ...the colinearity of this gene with other genomes.
  • ...the local gene organization for homologous genes.
  • ...the phylogenetic tree of the homologous gene family.
  • ...the orthologs using the Integrative Orthology Viewer.
  • ...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0035195TASGene Ontologygene silencing by miRNA1
GO:0048573IEPGene Ontologyphotoperiodism, flowering1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
32micro RNA, natural antisense etc
No SignalP domains detected for this gene.