Gene: AT2G25170 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G25170
Transcript Identifier
AT2G25170.1
Gene Type
Coding gene
Location
2 : 10714411-10723763 : positive

Family

Gene family
HOM03D000113
(850 genes in 31 species)
specific family
Subfamily
ORTHO03D001832
(46 genes in 28 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description
chromatin remodeling factor CHD3 (PICKLE)
Curated Summary
Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.
Show more...

Identifiers

Identifier Name
aliasPICKLE
aliasENHANCED PHOTOMORPHOGENIC 1
aliasGYMNOS
aliasCYTOKININ-HYPERSENSITIVE 2
aliasSUPPRESSOR OF SLR 2
aliasEPP1
aliasGYM
aliasSSL2
aliasCHR6
aliasCKH2
aliasCHD3
aliasPKL
uniprotQ9S775

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016568ISSUniProtchromatin modification1 2 3 4 5 6 7 8
GO:0045892IMPUniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8
GO:0009736IMPUniProtcytokinin-activated signaling pathway1 2 3 4 5 6 7 8
GO:0009733IMPUniProtresponse to auxin1 2 3 4 5 6 7 8
GO:2000023IMPUniProtregulation of lateral root development1 2 3 4 5 6 7 8
GO:0009788IMPUniProtnegative regulation of abscisic acid-activated signaling pathway1 2 3 4 5 6 7 8
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0016246RCAGene OntologyRNA interference1
GO:0008283IMPUniProtcell proliferation1 2 3 4 5 6 7 8
GO:0009739IMPUniProtresponse to gibberellin stimulus1 2 3 4 5 6 7 8
GO:0048364IMPUniProtroot development1 2 3 4 5 6 7 8

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEA, UniProtDNA binding1 2 3 4 5 6 7 8
GO:0003678ISSGene OntologyDNA helicase activity1
GO:0016887ISSGene OntologyATPase activity1
GO:0005515IEAInterProprotein binding
GO:0004386IEAUniProthelicase activity1 2 3 4 5 6 7
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000113
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000113
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000113
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000113
GO:0043167IEAPLAZA Homologyion bindingHOM03D000113
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000113
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000113
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03D000113
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000113
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000113
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000113
GO:0000166IEAPLAZA Homologynucleotide bindingHOM03D000113
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000113
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000113
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000113
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000113
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000113
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000113
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000113
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000113
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000113
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000113
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000113

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000330SNF2-related
IPR001965Zinc finger, PHD-type
IPR000953Chromo domain/shadow
IPR001650Helicase, C-terminal
IPR009057Homeodomain-like
IPR016197Chromo domain-like
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR009462Domain of unknown function DUF1086
IPR023780Chromo domain
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR019786Zinc finger, PHD-type, conserved site
IPR009463Domain of unknown function DUF1087

Mapman id Description
28.99DNA.unspecified
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD