Gene: AT2G23740 (Arabidopsis thaliana)

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Gene Identifier
AT2G23740
Transcript Identifier
AT2G23740.2
Gene Type
Coding gene
Location
2 : 10098213-10103229 : positive

Family

Gene family
HOM03D000224
(463 genes in 30 species)
specific family
Subfamily
ORTHO03D003170
(38 genes in 27 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
Curated Summary
Encodes a SET-domain protein SUVR5 that mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.
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Identifiers

Identifier Name
aliasSUVR5
aliasSU(VAR)3-9-RELATED protein 5
uniprotO64827

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006342IMPGene Ontologychromatin silencing1
GO:1900109IMPGene Ontologyregulation of histone H3-K9 dimethylation1
GO:0034968IEAInterProhistone lysine methylation
GO:0006325IEAPLAZA Homologychromatin organizationHOM03D000224
GO:0032259IEAPLAZA HomologymethylationHOM03D000224
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03D000224
GO:0016043IEAPLAZA Homologycellular component organizationHOM03D000224
GO:0051276IEAPLAZA Homologychromosome organizationHOM03D000224
GO:0006479IEAPLAZA Homologyprotein methylationHOM03D000224
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03D000224
GO:0016571IEAPLAZA Homologyhistone methylationHOM03D000224
GO:0016570IEAPLAZA Homologyhistone modificationHOM03D000224
GO:0043414IEAPLAZA Homologymacromolecule methylationHOM03D000224
GO:0043412IEAPLAZA Homologymacromolecule modificationHOM03D000224
GO:0008213IEAPLAZA Homologyprotein alkylationHOM03D000224
GO:0006464IEAPLAZA Homologycellular protein modification processHOM03D000224
GO:0016569IEAPLAZA Homologycovalent chromatin modificationHOM03D000224
GO:0036211IEAPLAZA Homologyprotein modification processHOM03D000224
GO:0016568IEAPLAZA Homologychromatin modificationHOM03D000224

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676ISSGene Ontologynucleic acid binding1
GO:0008270IEA, ISSUniProtzinc ion binding1 2 3 4 5
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0043565IDAGene Ontologysequence-specific DNA binding1
GO:0005515IEAInterProprotein binding
GO:0046872IEAInterPrometal ion binding
GO:0018024IEAUniProthistone-lysine N-methyltransferase activity1 2 3 4
GO:0008168IEAPLAZA Homologymethyltransferase activityHOM03D000224
GO:0008757IEAPLAZA HomologyS-adenosylmethionine-dependent methyltransferase activityHOM03D000224
GO:0008170IEAPLAZA HomologyN-methyltransferase activityHOM03D000224
GO:0008276IEAPLAZA Homologyprotein methyltransferase activityHOM03D000224
GO:0042054IEAPLAZA Homologyhistone methyltransferase activityHOM03D000224
GO:0042393IEAPLAZA Homologyhistone bindingHOM03D000224
GO:0016278IEAPLAZA Homologylysine N-methyltransferase activityHOM03D000224
GO:0016279IEAPLAZA Homologyprotein-lysine N-methyltransferase activityHOM03D000224
GO:0016741IEAPLAZA Homologytransferase activity, transferring one-carbon groupsHOM03D000224

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5
GO:0005694IEAUniProtchromosome1 2 3 4

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001214SET domain
IPR015880Zinc finger, C2H2-like
IPR003616Post-SET domain
IPR007728Pre-SET domain
IPR007087Zinc finger, C2H2
IPR003606Pre-SET zinc-binding sub-group

Mapman id Description
27.3.11RNA.regulation of transcription.C2H2 zinc finger family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBC2H2