PLAZA 3.0 Dicots gene overview : AT2G18650

Gene: AT2G18650 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G18650
Transcript Identifier: AT2G18650.1
Gene Type: Coding gene
Location: 2 : 8086860-8088131 : negative

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily: ORTHO03D002784
(40 genes in 27 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: RING/U-box superfamily protein

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Identifiers

Identifier	Name
alias	MEE16
alias	maternal effect embryo arrest 16
uniprot	Q9ZV53

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009793	IMP	UniProt	embryo development ending in seed dormancy	1 2 3 4 5
GO:0016567	IEA	UniProt	protein ubiquitination	1 2 3 4
GO:0080167	ISO	PLAZA Tree-based Orthology	response to karrikin	AT4G30400

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	UniProt	zinc ion binding	1 2 3 4 5
GO:0005515	IEA	InterPro	protein binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.