Gene: AT2G06210 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G06210
Transcript Identifier
AT2G06210.1
Gene Type
Coding gene
Location
2 : 2429108-2436588 : negative

Family

Gene family
HOM03D004640
(43 genes in 31 species)
specific family

Loading...please wait

Descriptions

Description
binding
Curated Summary
Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Show more...

Identifiers

Identifier Name
aliasVIP6
aliasELF8
aliasEARLY FLOWERING 8
aliasVERNALIZATION INDEPENDENCE 6

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009910IMPGene Ontologynegative regulation of flower development1
GO:0045893IMP, RCAGene Ontologypositive regulation of transcription, DNA-dependent1 2
GO:0016571IMP, RCAGene Ontologyhistone methylation1 2
GO:0000003RCAGene Ontologyreproduction1
GO:0000398RCAGene OntologymRNA splicing, via spliceosome1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006325RCAGene Ontologychromatin organization1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0007131RCAGene Ontologyreciprocal meiotic recombination1
GO:0008284RCAGene Ontologypositive regulation of cell proliferation1
GO:0009630RCAGene Ontologygravitropism1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0010638RCAGene Ontologypositive regulation of organelle organization1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016572RCAGene Ontologyhistone phosphorylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0030422RCAGene Ontologyproduction of siRNA involved in RNA interference1
GO:0031047RCAGene Ontologygene silencing by RNA1
GO:0031048RCAGene Ontologychromatin silencing by small RNA1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0051276RCAGene Ontologychromosome organization1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0016020IDAGene Ontologymembrane1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR019734Tetratricopeptide repeat
IPR011990Tetratricopeptide-like helical
IPR001440Tetratricopeptide TPR1
IPR013105Tetratricopeptide TPR2
IPR013026Tetratricopeptide repeat-containing domain

Mapman id Description
33.99development.unspecified
No SignalP domains detected for this gene.