Gene: AT1G70500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G70500
Transcript Identifier
AT1G70500.1
Gene Type
Coding gene
Location
1 : 26566579-26568729 : negative

Family

Gene family
HOM03D000052
(1449 genes in 30 species)
specific family
Subfamily
ORTHO03D002491
(41 genes in 27 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Pectin lyase-like superfamily protein
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process1
GO:0009887RCAGene Ontologyorgan morphogenesis1
GO:0009888RCAGene Ontologytissue development1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0010638RCAGene Ontologypositive regulation of organelle organization1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0042546RCAGene Ontologycell wall biogenesis1
GO:0044036RCAGene Ontologycell wall macromolecule metabolic process1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000052
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000052
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000052

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650ISS, IEAGene Ontologypolygalacturonase activity1
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000052
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000052
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000052
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000052

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR000743Glycoside hydrolase, family 28
IPR012334Pectin lyase fold
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network