Gene: AT1G66040 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G66040
Transcript Identifier
AT1G66040.1
Gene Type
Coding gene
Location
1 : 24583820-24586681 : negative

Family

Gene family
HOM03D001750
(94 genes in 30 species)
specific family
Subfamily
ORTHO03D000897
(63 genes in 28 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Zinc finger (C3HC4-type RING finger) family protein
Curated Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
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Identifiers

Identifier Name
aliasVIM4
aliasORTHRUS 4
aliasORTH4
aliasVARIANT IN METHYLATION 4
uniprotQ9C8E1
uniprotQ680I0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016568IEAUniProtchromatin modification1 2 3 4 5 6 7 8
GO:0010424ISSUniProtDNA methylation on cytosine within a CG sequence1 2 3
GO:0090309IMPUniProtpositive regulation of methylation-dependent chromatin silencing1 2 3 4 5
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT5G39550
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT5G39550 AT1G66050 AT1G57820 AT4G08590
GO:0032776ISOPLAZA Integrative OrthologyDNA methylation on cytosineAT5G39550 AT1G66050
GO:0051301ISOPLAZA Tree-based Orthologycell divisionAT1G57820
GO:0031508ISOPLAZA Tree-based Orthologycentromeric heterochromatin assemblyAT1G57820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEA, ISS, UniProtzinc ion binding1 2 3 4 5 6 7 8 9
GO:0005515IEAInterProprotein binding
GO:0042393ISS, IEA, UniProthistone binding1 2 3 4 5 6 7 8
GO:0046872IEAInterPrometal ion binding
GO:0008327ISSUniProtmethyl-CpG binding1 2 3 4 5 6 7 8
GO:0010428ISSUniProtmethyl-CpNpG binding1 2 3 4 5 6 7 8
GO:0010429ISSUniProtmethyl-CpNpN binding1 2 3 4 5 6 7 8
GO:0004842IDA, ISSUniProtubiquitin-protein ligase activity1 2 3 4 5 6 7 8
GO:0010385ISOPLAZA Tree-based Orthologydouble-stranded methylated DNA bindingAT1G57820
GO:0003682ISOPLAZA Tree-based Orthologychromatin bindingAT1G57820

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISS, ISMUniProtnucleus1 2 3 4 5 6 7 8 9
GO:0005737ISOPLAZA Tree-based OrthologycytoplasmAT4G08590
GO:0010369ISOPLAZA Tree-based OrthologychromocenterAT1G57820

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003105SRA-YDG
IPR019786Zinc finger, PHD-type, conserved site
IPR001841Zinc finger, RING-type
IPR017907Zinc finger, RING-type, conserved site
IPR018957Zinc finger, C3HC4 RING-type
IPR015947PUA-like domain
IPR011011Zinc finger, FYVE/PHD-type
IPR001965Zinc finger, PHD-type

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.