Gene: AT1G62990 (Arabidopsis thaliana)

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Gene Identifier
AT1G62990
Transcript Identifier
AT1G62990.1
Gene Type
Coding gene
Location
1 : 23337468-23340348 : positive

Family

Gene family
HOM03D000315
(370 genes in 31 species)
specific family
Subfamily
ORTHO03D005878
(33 genes in 28 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
KNOTTED-like homeobox of Arabidopsis thaliana 7
Curated Summary
Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.
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Identifiers

Identifier Name
aliasIXR11
aliasKNAT7
aliasKNOTTED-like homeobox of Arabidopsis thaliana 7
uniprotQ9FPQ8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010089IMP, RCA, UniProtxylem development1 2 3 4 5 6
GO:2000652IMPUniProtregulation of secondary cell wall biogenesis1 2 3 4 5
GO:0045892IDAUniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5
GO:0007155RCAGene Ontologycell adhesion1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0044036RCAGene Ontologycell wall macromolecule metabolic process1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0048513RCAGene Ontologyorgan development1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000315
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000315
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000315
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000315
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000315
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000315
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000315
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000315
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000315
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000315
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000315
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000315
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000315
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000315
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000315
GO:0006351IEAPLAZA Homologytranscription, DNA-templatedHOM03D000315
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000315
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000315
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000315
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000315
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000315

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5
GO:0043565IEAUniProtsequence-specific DNA binding1 2 3 4
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000315
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000315

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5 6
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000315
GO:0005622IEAPLAZA HomologyintracellularHOM03D000315
GO:0043226IEAPLAZA HomologyorganelleHOM03D000315
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000315
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000315
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000315

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005539ELK
IPR001356Homeobox domain
IPR005540KNOX1
IPR008422Homeobox KN domain
IPR005541KNOX2
IPR009057Homeodomain-like

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not available929 genes in 10 species

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DatabaseType
PlnTFDBHB
PlantTFDBTALE