Gene: AT1G62750 (Arabidopsis thaliana)

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Gene Identifier
AT1G62750
Transcript Identifier
AT1G62750.1
Gene Type
Coding gene
Location
1 : 23233622-23236321 : negative

Family

Gene family
HOM03D001299
(119 genes in 30 species)
specific family
Subfamily
ORTHO03D003166
(38 genes in 28 species)
specific family

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Descriptions

Description
Translation elongation factor EFG/EF2 protein
Curated Summary
Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.
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Identifiers

Identifier Name
aliasSCO1
aliasATSCO1/CPEF-G
aliasSNOWY COTYLEDON 1
aliasATSCO1
uniprotQ9SI75

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009658IMP, RCA, UniProtchloroplast organization1 2 3 4 5 6
GO:0009791IMPGene Ontologypost-embryonic development1
GO:0009845IMPUniProtseed germination1 2 3 4 5
GO:0000023RCAGene Ontologymaltose metabolic process1
GO:0006098RCAGene Ontologypentose-phosphate shunt1
GO:0006354RCAGene OntologyDNA-dependent transcription, elongation1
GO:0006364RCAGene OntologyrRNA processing1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009902RCAGene Ontologychloroplast relocation1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0010207RCAGene Ontologyphotosystem II assembly1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0016226RCAGene Ontologyiron-sulfur cluster assembly1
GO:0019252RCAGene Ontologystarch biosynthetic process1
GO:0034660RCAGene OntologyncRNA metabolic process1
GO:0035304RCAGene Ontologyregulation of protein dephosphorylation1
GO:0042793RCAGene Ontologytranscription from plastid promoter1
GO:0043085RCAGene Ontologypositive regulation of catalytic activity1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0048481RCAGene Ontologyovule development1
GO:0006414IEAInterProtranslational elongation
GO:0006184IEAUniProtGTP catabolic process1 2 3 4

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003746IEA, ISSUniProttranslation elongation factor activity1 2 3 4 5
GO:0008135ISSGene Ontologytranslation factor activity, nucleic acid binding1
GO:0005525IEA, ISSUniProtGTP binding1 2 3 4 5
GO:0005524IDAUniProtATP binding1 2 3 4 5
GO:0003924IEAUniProtGTPase activity1 2 3 4

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISMGene Ontologychloroplast1 2
GO:0009941IDAUniProtchloroplast envelope1 2 3 4 5
GO:0009570IDAUniProtchloroplast stroma1 2 3 4 5
GO:0005739IDAUniProtmitochondrion1 2 3 4 5
GO:0048046IDAUniProtapoplast1 2 3 4 5
GO:0005622IEAInterProintracellular

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005517Translation elongation factor EFG/EF2, domain IV
IPR009022Elongation factor G, III-V domain
IPR000795Elongation factor, GTP-binding domain
IPR000640Translation elongation factor EFG, V domain
IPR005225Small GTP-binding protein domain
IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
IPR004161Translation elongation factor EFTu/EF1A, domain 2
IPR020568Ribosomal protein S5 domain 2-type fold
IPR009000Translation protein, beta-barrel domain
IPR004540Translation elongation factor EFG/EF2
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
29.2.4protein.synthesis.elongation
No SignalP domains detected for this gene.