Gene: AT1G62360 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G62360
Transcript Identifier
AT1G62360.1
Gene Type
Coding gene
Location
1 : 23058796-23061722 : negative

Family

Gene family
HOM03D000315
(370 genes in 31 species)
specific family
Subfamily
ORTHO03D006644
(32 genes in 26 species)
specific family

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Descriptions

Description
KNOX/ELK homeobox transcription factor
Curated Summary
Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.
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Identifiers

Identifier Name
aliasSHL
aliasBUMBERSHOOT 1
aliasWALDMEISTER 1
aliasSHOOTLESS
aliasWALDMEISTER
aliasBUM1
aliasSHOOT MERISTEMLESS
aliasWAM
aliasBUM
aliasBUMBERSHOOT
aliasSTM
aliasWAM1
uniprotQ38874

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0019827TASUniProtstem cell maintenance1 2 3 4 5 6 7 8 9
GO:0009934IMPUniProtregulation of meristem structural organization1 2 3 4 5 6 7 8 9
GO:0009691TASUniProtcytokinin biosynthetic process1 2 3 4 5 6 7 8 9
GO:0048440IMP, RCA, UniProtcarpel development1 2 3 4 5 6 7 8 9 10
GO:0007389RCAGene Ontologypattern specification process1
GO:0009855RCAGene Ontologydetermination of bilateral symmetry1
GO:0009886RCAGene Ontologypost-embryonic morphogenesis1
GO:0009887RCAGene Ontologyorgan morphogenesis1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0010051RCAGene Ontologyxylem and phloem pattern formation1
GO:0010093RCAGene Ontologyspecification of floral organ identity1
GO:0048438RCAGene Ontologyfloral whorl development1
GO:0048439RCAGene Ontologyflower morphogenesis1
GO:0048481RCAGene Ontologyovule development1
GO:0048507RCAGene Ontologymeristem development1
GO:0048513RCAGene Ontologyorgan development1
GO:0048519RCAGene Ontologynegative regulation of biological process1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0060777ISOPLAZA Integrative Orthologycompound leaf morphogenesisSL02G081120
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000315
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000315
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000315
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000315
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000315
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000315
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000315
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000315
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000315
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000315
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000315
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000315
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000315
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000315
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000315
GO:0006351IEAPLAZA Homologytranscription, DNA-templatedHOM03D000315
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000315
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000315
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000315
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000315
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000315

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9
GO:0005515IPIGene Ontologyprotein binding1
GO:0043565IEAUniProtsequence-specific DNA binding1 2 3 4 5 6 7 8
GO:0003677IEAInterProDNA binding
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000315
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000315

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000315
GO:0005622IEAPLAZA HomologyintracellularHOM03D000315
GO:0043226IEAPLAZA HomologyorganelleHOM03D000315
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000315
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000315
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000315

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001356Homeobox domain
IPR009057Homeodomain-like
IPR005539ELK
IPR005540KNOX1
IPR008422Homeobox KN domain
IPR005541KNOX2
IPR017970Homeobox, conserved site

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBHB
PlantTFDBTALE