Gene: AT1G59940 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G59940
Transcript Identifier
AT1G59940.1
Gene Type
Coding gene
Location
1 : 22065894-22066895 : negative

Family

Gene family
HOM03D000425
(295 genes in 29 species)
specific family
Subfamily
ORTHO03D003865
(37 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
response regulator 3
Curated Summary
Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.
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Identifiers

Identifier Name
aliasresponse regulator 3
aliasARR3
uniprotQ9ZWS9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355TAS, IEA, UniProtregulation of transcription, DNA-dependent1 2 3 4 5
GO:0009736TASUniProtcytokinin-activated signaling pathway1 2 3 4 5
GO:0010114IMPGene Ontologyresponse to red light1
GO:0010161IMPUniProtred light signaling pathway1 2 3 4 5
GO:0007623IMPUniProtcircadian rhythm1 2 3 4 5
GO:0042752IGIUniProtregulation of circadian rhythm1 2 3 4 5
GO:0000160IDA, TAS, IEAGene Ontologyphosphorelay signal transduction system1 2
GO:0009735IEPGene Ontologyresponse to cytokinin1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4
GO:0046777ISOPLAZA Tree-based Orthologyprotein autophosphorylationAT1G10470
GO:0009793ISOPLAZA Tree-based Orthologyembryo development ending in seed dormancyAT1G10470
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000425
GO:0051716IEAPLAZA Homologycellular response to stimulusHOM03D000425
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000425
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000425
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000425
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000425
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000425
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000425
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000425
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000425
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000425
GO:0023052IEAPLAZA HomologysignalingHOM03D000425
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000425
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000425
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000425
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000425
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000425
GO:0007154IEAPLAZA Homologycell communicationHOM03D000425
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000425
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000425
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000425
GO:0007165IEAPLAZA Homologysignal transductionHOM03D000425
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000425
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000425
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000425
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000425
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000425
GO:0044700IEAPLAZA Homologysingle organism signalingHOM03D000425
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03D000425

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000156IDA, ISSIEA, UniProtphosphorelay response regulator activity1 2 3 4 5 6
GO:0004674ISOPLAZA Tree-based Orthologyprotein serine/threonine kinase activityAT1G10470
GO:0005515ISOPLAZA Tree-based Orthologyprotein bindingAT1G10470
GO:0060089IEAPLAZA Homologymolecular transducer activityHOM03D000425
GO:0004871IEAPLAZA Homologysignal transducer activityHOM03D000425

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDAUniProtnucleus1 2 3 4 5
GO:0005737IDAUniProtcytoplasm1 2 3 4 5

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001789Signal transduction response regulator, receiver domain
IPR011006CheY-like superfamily

Mapman id Description
27.3.5RNA.regulation of transcription.ARR
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBOrphans