Gene: AT1G54490 (Arabidopsis thaliana)

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Gene Identifier
AT1G54490
Transcript Identifier
AT1G54490.1
Gene Type
Coding gene
Location
1 : 20350300-20356650 : positive

Family

Gene family
HOM03D001125
(137 genes in 31 species)
specific family
Subfamily
ORTHO03D000363
(96 genes in 31 species)
specific family

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Descriptions

Description
exoribonuclease 4
Curated Summary
Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.
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Identifiers

Identifier Name
aliasETHYLENE INSENSITIVE 5
aliasexoribonuclease 4
aliasATXRN4
aliasEIN5
aliasAIN1
aliasACC INSENSITIVE 1
aliasXRN4
aliasEXORIBONUCLEASE 4
uniprotQ9FQ04

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009630IMP, RCAGene Ontologygravitropism1 2
GO:0009723IMPGene Ontologyresponse to ethylene1
GO:0009873IGI, IMP, UniProtethylene mediated signaling pathway1 2 3 4 5 6 7 8 9
GO:0009961IMPGene Ontologyresponse to 1-aminocyclopropane-1-carboxylic acid1
GO:0009826IMPUniProtunidimensional cell growth1 2 3 4 5 6 7 8
GO:0000291IMPUniProtnuclear-transcribed mRNA catabolic process, exonucleolytic1 2 3 4 5 6 7 8
GO:0031087IMPUniProtdeadenylation-independent decapping of nuclear-transcribed mRNA1 2 3 4 5 6 7 8
GO:0040029IMPUniProtregulation of gene expression, epigenetic1 2 3 4 5 6 7 8
GO:0010587IMPUniProtmiRNA catabolic process1 2 3 4 5 6 7 8
GO:0000003RCAGene Ontologyreproduction1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006325RCAGene Ontologychromatin organization1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0006486RCAGene Ontologyprotein glycosylation1
GO:0006487RCAGene Ontologyprotein N-linked glycosylation1
GO:0007131RCAGene Ontologyreciprocal meiotic recombination1
GO:0007155RCAGene Ontologycell adhesion1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0008284RCAGene Ontologypositive regulation of cell proliferation1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0010014RCAGene Ontologymeristem initiation1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0010638RCAGene Ontologypositive regulation of organelle organization1
GO:0016049RCAGene Ontologycell growth1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0048589RCAGene Ontologydevelopmental growth1
GO:0006397IEAUniProtmRNA processing1 2 3 4 5 6 7

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEA, ISSUniProtnucleic acid binding1 2 3 4 5 6 7 8
GO:0008409ISSGene Ontology5'-3' exonuclease activity1
GO:0004534IMP, IGIUniProt5'-3' exoribonuclease activity1 2 3 4 5 6 7 8 9
GO:0004527IEAInterProexonuclease activity
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8
GO:0005622IEAInterProintracellular

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001878Zinc finger, CCHC-type
IPR0270735'-3' exoribonuclease
IPR004859Putative 5-3 exonuclease

Mapman id Description
28.99DNA.unspecified
No SignalP domains detected for this gene.