PLAZA 3.0 Dicots gene overview : AT1G53600

Gene: AT1G53600 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G53600
Transcript Identifier: AT1G53600.1
Gene Type: Coding gene
Location: 1 : 20001263-20003416 : positive

Family

Gene family: HOM03D000001
(7584 genes in 29 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Tetratricopeptide repeat (TPR)-like superfamily protein

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Identifiers

Identifier	Name
uniprot	Q9C8L6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000001

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IEA, ISM	UniProt	mitochondrion	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical
IPR002885	Pentatricopeptide repeat

Mapman id	Description
35.1.5	not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein

No SignalP domains detected for this gene.