PLAZA 3.0 Dicots gene overview : AT1G50490

Gene: AT1G50490 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G50490
Transcript Identifier: AT1G50490.1
Gene Type: Coding gene
Location: 1 : 18705005-18706303 : negative

Family

Gene family: HOM03D000071
(1215 genes in 31 species)
specific family
Subfamily: ORTHO03D044889
(3 genes in 3 species)
specific family
Duplication type: Block duplicate

Loading...please wait

Descriptions

Description: ubiquitin-conjugating enzyme 20

Curated Summary: Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.

Show more...

Identifiers

Identifier	Name
alias	ubiquitin-conjugating enzyme 20
alias	UBC20
uniprot	Q8L7T3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008283	IEP, RCA,	UniProt	cell proliferation	1 2 3 4 5 6 7
GO:0000226	RCA	Gene Ontology	microtubule cytoskeleton organization	1
GO:0000911	RCA	Gene Ontology	cytokinesis by cell plate formation	1
GO:0042023	RCA	Gene Ontology	DNA endoreduplication	1
GO:0043161	RCA	Gene Ontology	proteasome-mediated ubiquitin-dependent protein catabolic process	1
GO:0043248	RCA	Gene Ontology	proteasome assembly	1
GO:0051510	RCA	Gene Ontology	regulation of unidimensional cell growth	1
GO:0051788	RCA	Gene Ontology	response to misfolded protein	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004842	ISS	UniProt	ubiquitin-protein ligase activity	1 2 3 4 5 6
GO:0016881	IEA	InterPro	acid-amino acid ligase activity
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5
GO:0016874	IEA	PLAZA Homology	ligase activity	HOM03D000071
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000071
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000071

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000608	Ubiquitin-conjugating enzyme, E2
IPR016135	Ubiquitin-conjugating enzyme/RWD-like
IPR023313	Ubiquitin-conjugating enzyme, active site

Mapman id	Description
29.5.11.3	protein.degradation.ubiquitin.E2

No SignalP domains detected for this gene.