Gene: AT1G50410 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G50410
Transcript Identifier
AT1G50410.1
Gene Type
Coding gene
Location
1 : 18672828-18677365 : positive

Family

Gene family
HOM03D000456
(277 genes in 31 species)
specific family
Subfamily
ORTHO03D014859
(13 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006487RCAGene Ontologyprotein N-linked glycosylation1
GO:0006816RCAGene Ontologycalcium ion transport1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0045492RCAGene Ontologyxylan biosynthetic process1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0004386ISS, IEAGene Ontologyhelicase activity1
GO:0005524ISS, IEAGene OntologyATP binding1
GO:0008270ISS, IEAGene Ontologyzinc ion binding1
GO:0005515IEAInterProprotein binding
GO:0003676IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR001841Zinc finger, RING-type
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR000330SNF2-related
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR017907Zinc finger, RING-type, conserved site
IPR001650Helicase, C-terminal

Mapman id Description
27.3.44RNA.regulation of transcription.Chromatin Remodeling Factors
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSNF2