Gene: AT1G49950 (Arabidopsis thaliana)

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Gene Identifier
AT1G49950
Transcript Identifier
AT1G49950.3
Gene Type
Coding gene
Location
1 : 18494439-18496713 : negative

Family

Gene family
HOM03D000881
(164 genes in 31 species)
specific family
Subfamily
ORTHO03D004458
(35 genes in 25 species)
specific family

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Descriptions

Description
telomere repeat binding factor 1
Curated Summary
Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.
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Identifiers

Identifier Name
aliasTRB1
aliasTELOMERE REPEAT BINDING FACTOR 1
aliastelomere repeat binding factor 1
aliasATTRB1
uniprotQ8VWK4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009651IEPUniProtresponse to salt stress1 2 3 4 5 6 7 8 9 10
GO:0009723IEPUniProtresponse to ethylene1 2 3 4 5 6 7 8 9 10
GO:0009733IEPUniProtresponse to auxin1 2 3 4 5 6 7 8 9 10
GO:0009737IEPUniProtresponse to abscisic acid1 2 3 4 5 6 7 8 9 10
GO:0009739IEPUniProtresponse to gibberellin stimulus1 2 3 4 5 6 7 8 9 10
GO:0009751IEPUniProtresponse to salicylic acid1 2 3 4 5 6 7 8 9 10
GO:0009753IEPUniProtresponse to jasmonic acid1 2 3 4 5 6 7 8 9 10
GO:0046686IEPUniProtresponse to cadmium ion1 2 3 4 5 6 7 8 9 10
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0006334IEAUniProtnucleosome assembly1 2 3 4 5 6 7 8 9
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03D000881

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10
GO:0005515IPIGene Ontologyprotein binding1
GO:0042803IPIGene Ontologyprotein homodimerization activity1
GO:0003691IDAUniProtdouble-stranded telomeric DNA binding1 2 3 4 5 6 7 8 9 10
GO:0003682IEAUniProtchromatin binding1 2 3 4 5 6 7 8 9

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISM, IEAGene Ontologynucleus1
GO:0000786IEAUniProtnucleosome1 2 3 4 5 6 7 8 9
GO:0005730IEAUniProtnucleolus1 2 3 4 5 6 7 8 9
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03D000881

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005818Linker histone H1/H5, domain H15
IPR017930Myb domain
IPR009057Homeodomain-like
IPR001005SANT/Myb domain
IPR011991Winged helix-turn-helix DNA-binding domain

Mapman id Description
27.3.26RNA.regulation of transcription.MYB-related transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMYB-related
PlantTFDBMYB_related