Gene: AT1G49250 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G49250
Transcript Identifier
AT1G49250.1
Gene Type
Coding gene
Location
1 : 18220533-18224256 : positive

Family

Gene family
HOM03D001767
(94 genes in 31 species)
specific family
Subfamily
ORTHO03D021736
(6 genes in 6 species)
specific family

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Descriptions

Description
ATP-dependent DNA ligase
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006266IBAGene OntologyDNA ligation1
GO:0006260IEAInterProDNA replication
GO:0006281IEAInterProDNA repair
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006310IEAInterProDNA recombination

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003910IBA, ISS, IEAGene OntologyDNA ligase (ATP) activity1 2
GO:0005524ISS, IEAGene OntologyATP binding1
GO:0003909IEAInterProDNA ligase activity
GO:0003677IEAInterProDNA binding
GO:0016886IEAPLAZA Homologyligase activity, forming phosphoric ester bondsHOM03D001767

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IBA, ISMGene Ontologynucleus1 2
GO:0005739IBAGene Ontologymitochondrion1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012340Nucleic acid-binding, OB-fold
IPR012310DNA ligase, ATP-dependent, central
IPR000977DNA ligase, ATP-dependent

Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.