PLAZA 3.0 Dicots gene overview : AT1G33980

Gene: AT1G33980 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G33980
Transcript Identifier: AT1G33980.2
Gene Type: Coding gene
Location: 1 : 12351719-12354401 : positive

Family

Gene family: HOM03D002780
(65 genes in 31 species)
specific family
Subfamily: ORTHO03D001594
(48 genes in 29 species)
specific family

Loading...please wait

Descriptions

Description: Smg-4/UPF3 family protein

Curated Summary: Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)

Show more...

Identifiers

Identifier	Name
alias	ATUPF3
alias	UPF3
uniprot	Q9FVW4

Toolbox

Explore

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000184	IMP	UniProt	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1 2 3 4 5 6 7 8 9 10
GO:0042742	IMP	UniProt	defense response to bacterium	1 2 3 4 5 6 7 8 9 10
GO:0000956	RCA	Gene Ontology	nuclear-transcribed mRNA catabolic process	1
GO:0009867	IMP	UniProt	jasmonic acid mediated signaling pathway	1 2 3 4 5 6 7 8 9
GO:0048571	IMP	UniProt	long-day photoperiodism	1 2 3 4 5 6 7 8 9
GO:0051028	IEA	UniProt	mRNA transport	1 2 3 4 5 6 7 8 9
GO:0009611	IMP	UniProt	response to wounding	1 2 3 4 5 6 7 8 9
GO:0009863	IMP	UniProt	salicylic acid mediated signaling pathway	1 2 3 4 5 6 7 8 9

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	UniProt	nucleotide binding	1 2 3 4 5 6 7 8 9
GO:0003723	IEA	UniProt	RNA binding	1 2 3 4 5 6 7 8 9
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D002780

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005730	IDA	UniProt	nucleolus	1 2 3 4 5 6 7 8 9 10
GO:0005737	IEA	UniProt	cytoplasm	1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012677	Nucleotide-binding, alpha-beta plait
IPR005120	Regulator of nonsense-mediated decay, UPF3

Mapman id	Description
35.1	not assigned.no ontology

No SignalP domains detected for this gene.