Gene: AT1G33980 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT1G33980
- Transcript Identifier
- AT1G33980.2
- Gene Type
- Coding gene
- Location
- 1 : 12351719-12354401 : positive
Family
- Gene family
- Subfamily
Descriptions
- Description
-
Smg-4/UPF3 family protein
- Curated Summary
-
Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)
Identifiers
Identifier | Name |
---|---|
alias | ATUPF3 |
alias | UPF3 |
uniprot | Q9FVW4 |
Toolbox
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Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0000184 | IMP | UniProt | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 1 2 3 4 5 6 7 8 9 10 |
GO:0042742 | IMP | UniProt | defense response to bacterium | 1 2 3 4 5 6 7 8 9 10 |
GO:0000956 | RCA | Gene Ontology | nuclear-transcribed mRNA catabolic process | 1 |
GO:0009867 | IMP | UniProt | jasmonic acid mediated signaling pathway | 1 2 3 4 5 6 7 8 9 |
GO:0048571 | IMP | UniProt | long-day photoperiodism | 1 2 3 4 5 6 7 8 9 |
GO:0051028 | IEA | UniProt | mRNA transport | 1 2 3 4 5 6 7 8 9 |
GO:0009611 | IMP | UniProt | response to wounding | 1 2 3 4 5 6 7 8 9 |
GO:0009863 | IMP | UniProt | salicylic acid mediated signaling pathway | 1 2 3 4 5 6 7 8 9 |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0000166 | IEA | UniProt | nucleotide binding | 1 2 3 4 5 6 7 8 9 |
GO:0003723 | IEA | UniProt | RNA binding | 1 2 3 4 5 6 7 8 9 |
GO:1901265 | IEA | PLAZA Homology | nucleoside phosphate binding | HOM03D002780 |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005634 | ISM | Gene Ontology | nucleus | 1 |
GO:0005730 | IDA | UniProt | nucleolus | 1 2 3 4 5 6 7 8 9 10 |
GO:0005737 | IEA | UniProt | cytoplasm | 1 2 3 4 5 6 7 8 9 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
Mapman id | Description |
---|---|
35.1 | not assigned.no ontology |
No SignalP domains detected for this gene.