Gene: AT1G33980 (Arabidopsis thaliana)

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Gene Identifier
AT1G33980
Transcript Identifier
AT1G33980.2
Gene Type
Coding gene
Location
1 : 12351719-12354401 : positive

Family

Gene family
HOM03D002780
(65 genes in 31 species)
specific family
Subfamily
ORTHO03D001594
(48 genes in 29 species)
specific family

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Descriptions

Description
Smg-4/UPF3 family protein
Curated Summary
Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)
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Identifiers

Identifier Name
aliasATUPF3
aliasUPF3
uniprotQ9FVW4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IMPUniProtnuclear-transcribed mRNA catabolic process, nonsense-mediated decay1 2 3 4 5 6 7 8 9 10
GO:0042742IMPUniProtdefense response to bacterium1 2 3 4 5 6 7 8 9 10
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0009867IMPUniProtjasmonic acid mediated signaling pathway1 2 3 4 5 6 7 8 9
GO:0048571IMPUniProtlong-day photoperiodism1 2 3 4 5 6 7 8 9
GO:0051028IEAUniProtmRNA transport1 2 3 4 5 6 7 8 9
GO:0009611IMPUniProtresponse to wounding1 2 3 4 5 6 7 8 9
GO:0009863IMPUniProtsalicylic acid mediated signaling pathway1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAUniProtnucleotide binding1 2 3 4 5 6 7 8 9
GO:0003723IEAUniProtRNA binding1 2 3 4 5 6 7 8 9
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002780

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005730IDAUniProtnucleolus1 2 3 4 5 6 7 8 9 10
GO:0005737IEAUniProtcytoplasm1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012677Nucleotide-binding, alpha-beta plait
IPR005120Regulator of nonsense-mediated decay, UPF3

Mapman id Description
35.1not assigned.no ontology
No SignalP domains detected for this gene.