Gene: AT1G32770 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G32770
Transcript Identifier
AT1G32770.1
Gene Type
Coding gene
Location
1 : 11865343-11866950 : negative

Family

Gene family
HOM03D000015
(2743 genes in 29 species)
specific family
Subfamily
ORTHO03D009304
(28 genes in 21 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
NAC domain containing protein 12
Curated Summary
Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.
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Identifiers

Identifier Name
aliasSND1
aliasNAC SECONDARY WALL THICKENING PROMOTING 3
aliasNST3
aliasANAC012
aliasNAC domain containing protein 12
aliasNAC012
aliasSECONDARY WALL-ASSOCIATED NAC DOMAIN 1
uniprotQ9LPI7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007275ISSGene Ontologymulticellular organismal development1
GO:0009834IMP, IGIUniProtsecondary cell wall biogenesis1 2 3 4 5 6 7 8 9 10
GO:0045893IDAUniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9
GO:0009809IGIUniProtlignin biosynthetic process1 2 3 4 5 6 7 8 9
GO:0010047IMPUniProtfruit dehiscence1 2 3 4 5 6 7 8 9
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000015
GO:0010467IEAPLAZA Homologygene expressionHOM03D000015
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000015
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03D000015
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000015
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000015
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000015
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000015
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000015
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000015
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000015
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000015
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000015
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000015
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000015
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000015
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000015
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000015
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000015
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000015
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000015
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000015
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000015
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03D000015
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000015
GO:0009987IEAPLAZA Homologycellular processHOM03D000015
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03D000015
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000015
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000015
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000015
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000015
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000015
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000015
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000015
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000015
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000015
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000015
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000015
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000015
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000015
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000015
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000015
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03D000015

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9
GO:0043565IDAUniProtsequence-specific DNA binding1 2 3 4 5 6 7 8 9
GO:0003677IEAInterProDNA binding
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000015
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000015
GO:0005488IEAPLAZA HomologybindingHOM03D000015
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000015

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003441NAC domain

Mapman id Description
33.99development.unspecified
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis8186 genes in 10 species
Matrix_322NST3;ANAC015;BRN2Not available585 genes in 10 species

View full overview
DatabaseType
PlnTFDBNAC
PlantTFDBNAC