Gene: AT1G32490 (Arabidopsis thaliana)

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Gene Identifier
AT1G32490
Transcript Identifier
AT1G32490.1
Gene Type
Coding gene
Location
1 : 11742356-11749286 : negative

Family

Gene family
HOM03D000135
(738 genes in 31 species)
specific family
Subfamily
ORTHO03D007808
(30 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
RNA helicase family protein
Curated Summary
Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.
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Identifiers

Identifier Name
aliasEMB2733
aliasEMBRYO DEFECTIVE 2733
aliasESP3
aliasENHANCED SILENCING PHENOTYPE 3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793NASGene Ontologyembryo development ending in seed dormancy1
GO:0008380NASGene OntologyRNA splicing1
GO:0035194IMPGene Ontologyposttranscriptional gene silencing by RNA1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004004ISSGene OntologyATP-dependent RNA helicase activity1
GO:0008026IEAInterProATP-dependent helicase activity
GO:0004386IEAInterProhelicase activity
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000135
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000135
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000135
GO:0042623IEAPLAZA HomologyATPase activity, coupledHOM03D000135
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000135
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000135
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000135
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03D000135
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000135
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000135
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000135
GO:0000166IEAPLAZA Homologynucleotide bindingHOM03D000135
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000135
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000135
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000135
GO:0016887IEAPLAZA HomologyATPase activityHOM03D000135
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000135
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000135
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000135
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000135
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000135
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000135
GO:0070035IEAPLAZA Homologypurine NTP-dependent helicase activityHOM03D000135

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0016020IDAGene Ontologymembrane1
GO:0009506ISOPLAZA Tree-based OrthologyplasmodesmaAT3G26560
GO:0005829ISOPLAZA Tree-based OrthologycytosolAT3G26560
GO:0005739ISOPLAZA Tree-based OrthologymitochondrionAT3G26560

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007502Helicase-associated domain
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR001650Helicase, C-terminal
IPR011709Domain of unknown function DUF1605
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR014001Helicase, superfamily 1/2, ATP-binding domain

Mapman id Description
27.1.2RNA.processing.RNA helicase
No SignalP domains detected for this gene.