PLAZA 3.0 Dicots gene overview : AT1G31800

Gene: AT1G31800 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G31800
Transcript Identifier: AT1G31800.1
Gene Type: Coding gene
Location: 1 : 11396440-11399470 : positive

Family

Gene family: HOM03D000070
(1217 genes in 31 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: cytochrome P450, family 97, subfamily A, polypeptide 3

Curated Summary: Encodes a protein with β-ring carotenoid hydroxylase activity.

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Identifiers

Identifier	Name
alias	LUTEIN DEFICIENT 5
alias	CYP97A3
alias	'cytochrome P450, family 97, subfamily A, polypeptide 3'
alias	LUT5
uniprot	Q93VK5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016117	IMP, RCA	Gene Ontology	carotenoid biosynthetic process	1 2
GO:0016123	IGI	UniProt	xanthophyll biosynthetic process	1 2 3 4 5 6 7
GO:0000023	RCA	Gene Ontology	maltose metabolic process	1
GO:0006636	RCA	Gene Ontology	unsaturated fatty acid biosynthetic process	1
GO:0006655	RCA	Gene Ontology	phosphatidylglycerol biosynthetic process	1
GO:0015995	RCA	Gene Ontology	chlorophyll biosynthetic process	1
GO:0019252	RCA	Gene Ontology	starch biosynthetic process	1
GO:0019288	RCA	Gene Ontology	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1
GO:0043085	RCA	Gene Ontology	positive regulation of catalytic activity	1
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000070
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03D000070
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000070

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0010291	IMP	UniProt	carotene beta-ring hydroxylase activity	1 2 3 4 5 6 7
GO:0005506	IEA	UniProt	iron ion binding	1 2 3 4 5 6
GO:0016705	IEA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 2 3 4 5 6
GO:0020037	IEA	UniProt	heme binding	1 2 3 4 5 6
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000070
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000070
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000070
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000070
GO:0046906	IEA	PLAZA Homology	tetrapyrrole binding	HOM03D000070
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000070
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000070
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000070
GO:0016491	IEA	PLAZA Homology	oxidoreductase activity	HOM03D000070
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000070

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1 2
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4 5 6 7
GO:0031969	IEA	UniProt	chloroplast membrane	1 2 3 4 5 6

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR017972	Cytochrome P450, conserved site
IPR002401	Cytochrome P450, E-class, group I

Mapman id	Description
16.1.4.7	secondary metabolism.isoprenoids.carotenoids.carotenoid epsilon ring hydroxylase

No SignalP domains detected for this gene.