Gene: AT1G25560 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G25560
Transcript Identifier
AT1G25560.1
Gene Type
Coding gene
Location
1 : 8981891-8982976 : negative

Family

Gene family
HOM03D000397
(313 genes in 30 species)
specific family
Subfamily
ORTHO03D003508
(37 genes in 22 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
AP2/B3 transcription factor family protein
Curated Summary
Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes.
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Identifiers

Identifier Name
aliasETHYLENE RESPONSE DNA BINDING FACTOR 1
aliasEDF1
aliasTEM1
aliasTEMPRANILLO 1
uniprotQ9C6M5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009873IEA, NASUniProtethylene mediated signaling pathway1 2 3 4 5 6
GO:0048573IMPUniProtphotoperiodism, flowering1 2 3 4 5 6
GO:0030003RCAGene Ontologycellular cation homeostasis1
GO:0070838RCAGene Ontologydivalent metal ion transport1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000397

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, NASUniProtDNA binding1 2 3 4 5 6
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5 6

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001471AP2/ERF domain
IPR003340B3 DNA binding domain
IPR015300DNA-binding pseudobarrel domain
IPR016177DNA-binding domain

Mapman id Description
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_319TEM1Not available0 genes in 0 species

View full overview
DatabaseType
PlnTFDBAP2-EREBP
PlantTFDBRAV