PLAZA 3.0 Dicots gene overview : AT1G23460

Gene: AT1G23460 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G23460
Transcript Identifier: AT1G23460.1
Gene Type: Coding gene
Location: 1 : 8327382-8329622 : positive

Family

Gene family: HOM03D000052
(1449 genes in 30 species)
specific family
Subfamily: ORTHO03D002491
(41 genes in 27 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Pectin lyase-like superfamily protein

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Identifiers

Identifier	Name

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	ISS, IEA	Gene Ontology	carbohydrate metabolic process	1
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000052
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000052
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000052

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004650	ISS, IEA	Gene Ontology	polygalacturonase activity	1
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000052
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03D000052
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000052
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03D000052

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006626	Parallel beta-helix repeat
IPR011050	Pectin lyase fold/virulence factor
IPR000743	Glycoside hydrolase, family 28
IPR012334	Pectin lyase fold

Mapman id	Description
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network