Gene: AT1G05260 (Arabidopsis thaliana)

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Gene Identifier
AT1G05260
Transcript Identifier
AT1G05260.1
Gene Type
Coding gene
Location
1 : 1529827-1531271 : positive

Family

Gene family
HOM03D000014
(2794 genes in 31 species)
specific family
Subfamily
ORTHO03D001227
(55 genes in 26 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description
Peroxidase superfamily protein
Curated Summary
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
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Identifiers

Identifier Name
aliasRCI3
aliasRARE COLD INDUCIBLE GENE 3
aliasRCI3A
uniprotO23044

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009269IMPUniProtresponse to desiccation1 2 3 4 5
GO:0009409IEPUniProtresponse to cold1 2 3 4 5
GO:0042538IMPUniProthyperosmotic salinity response1 2 3 4 5
GO:0006826RCAGene Ontologyiron ion transport1
GO:0010054RCAGene Ontologytrichoblast differentiation1
GO:0010106RCAGene Ontologycellular response to iron ion starvation1
GO:0010167RCAGene Ontologyresponse to nitrate1
GO:0015706RCAGene Ontologynitrate transport1
GO:0016132RCAGene Ontologybrassinosteroid biosynthetic process1
GO:0006979IEAInterProresponse to oxidative stress
GO:0055114IEAInterProoxidation-reduction process
GO:0042744IEAUniProthydrogen peroxide catabolic process1 2 3 4
GO:0044699IEAPLAZA Homologysingle-organism processHOM03D000014
GO:0006950IEAPLAZA Homologyresponse to stressHOM03D000014
GO:0044710IEAPLAZA Homologysingle-organism metabolic processHOM03D000014
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000014
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03D000014

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004601IDA, ISSIEA, UniProtperoxidase activity1 2 3 4 5 6
GO:0020037IEAUniProtheme binding1 2 3 4
GO:0046872IEAUniProtmetal ion binding1 2 3 4
GO:0016209IEAPLAZA Homologyantioxidant activityHOM03D000014
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000014
GO:0046906IEAPLAZA Homologytetrapyrrole bindingHOM03D000014
GO:0005488IEAPLAZA HomologybindingHOM03D000014
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000014
GO:0016491IEAPLAZA Homologyoxidoreductase activityHOM03D000014
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000014
GO:0016684IEAPLAZA Homologyoxidoreductase activity, acting on peroxide as acceptorHOM03D000014

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576IEA, ISMUniProtextracellular region1 2 3 4 5
GO:0005783ISSUniProtendoplasmic reticulum1 2 3 4 5
GO:0009506ISOPLAZA Tree-based OrthologyplasmodesmaAT3G21770
GO:0009505ISOPLAZA Tree-based Orthologyplant-type cell wallAT3G21770
GO:0005737ISOPLAZA Tree-based OrthologycytoplasmAT3G21770
GO:0005634ISOPLAZA Tree-based OrthologynucleusAT3G21770

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000823Plant peroxidase
IPR019793Peroxidases heam-ligand binding site
IPR002016Haem peroxidase, plant/fungal/bacterial
IPR010255Haem peroxidase
IPR019794Peroxidase, active site

Mapman id Description
20.2.2stress.abiotic.cold
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network