Gene: AT1G01060 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G01060
Transcript Identifier
AT1G01060.1
Gene Type
Coding gene
Location
1 : 33992-37061 : negative

Family

Gene family
HOM03D004260
(45 genes in 27 species)
specific family
Subfamily
ORTHO03D002914
(39 genes in 26 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Homeodomain-like superfamily protein
Curated Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
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Identifiers

Identifier Name
aliasLATE ELONGATED HYPOCOTYL 1
aliasLHY
aliasLHY1
aliasLATE ELONGATED HYPOCOTYL
uniprotQ6R0H1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355RCA, TASGene Ontologyregulation of transcription, DNA-dependent1 2
GO:0009651IEP, RCA, UniProtresponse to salt stress1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009723IEP, RCA, UniProtresponse to ethylene1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009733IEP, RCA, UniProtresponse to auxin1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009737IEP, RCA, UniProtresponse to abscisic acid1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009739IEP, RCA, UniProtresponse to gibberellin stimulus1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009751IEP, RCA, UniProtresponse to salicylic acid1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009753IEP, RCA, UniProtresponse to jasmonic acid1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0046686IEPUniProtresponse to cadmium ion1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0048574IGI, RCA, UniProtlong-day photoperiodism, flowering1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0042752IMP, RCAGene Ontologyregulation of circadian rhythm1 2
GO:0043433IMPUniProtnegative regulation of sequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0007623IGI, RCA, UniProtcircadian rhythm1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009409IGIUniProtresponse to cold1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0042754IMPUniProtnegative regulation of circadian rhythm1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009639RCAGene Ontologyresponse to red or far red light1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10 11 12
GO:0043496ISOPLAZA Tree-based Orthologyregulation of protein homodimerization activityAT2G46830
GO:0010243ISOPLAZA Tree-based Orthologyresponse to organonitrogen compoundAT2G46830
GO:0045893ISOPLAZA Tree-based Orthologypositive regulation of transcription, DNA-dependentAT2G46830
GO:0045892ISOPLAZA Tree-based Orthologynegative regulation of transcription, DNA-dependentAT2G46830

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700IDA, ISS, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0044212IDAUniProttranscription regulatory region DNA binding1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0003682IEAUniProtchromatin binding1 2 3 4 5 6 7 8 9 10 11 12
GO:0043565ISOPLAZA Tree-based Orthologysequence-specific DNA bindingAT2G46830
GO:0005515ISOPLAZA Tree-based Orthologyprotein bindingAT2G46830

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009057Homeodomain-like
IPR006447Myb domain, plants
IPR001005SANT/Myb domain
IPR017930Myb domain

Mapman id Description
27.3.26RNA.regulation of transcription.MYB-related transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Motif_554AtLHY;AtCCA1LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms14 genes in 8 species
Matrix_157LHY;RVE2Not available28 genes in 5 species

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DatabaseType
PlnTFDBMYB-related
PlantTFDBMYB_related