PLAZA 3.0 Dicots gene overview : AL8G11030

Gene: AL8G11030 (Arabidopsis lyrata)

Overview

Gene Identifier: AL8G11030
Transcript Identifier: AL8G11030.1
Gene Type: Coding gene
Location: scaffold_8 : 11485469-11487791 : positive

Family

Gene family: HOM03D000538
(245 genes in 31 species)
specific family
Subfamily: ORTHO03D000622
(74 genes in 29 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): adenylyltransferase small subunit, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	494882
GeneName	g494882
id	PAC:16038537

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009058	IEA	Genome Project	biosynthetic process
GO:0005978	IEA	InterPro	glycogen biosynthetic process
GO:0019252	ISO	PLAZA Integrative Orthology	starch biosynthetic process	OS09G12660 OS08G25734 AT5G48300
GO:0005982	ISO	PLAZA Integrative Orthology	starch metabolic process	OS08G25734
GO:0048573	ISO	PLAZA Integrative Orthology	photoperiodism, flowering	AT5G48300
GO:0044264	IEA	PLAZA Homology	cellular polysaccharide metabolic process	HOM03D000538
GO:0044262	IEA	PLAZA Homology	cellular carbohydrate metabolic process	HOM03D000538
GO:0006073	IEA	PLAZA Homology	cellular glucan metabolic process	HOM03D000538
GO:0006091	IEA	PLAZA Homology	generation of precursor metabolites and energy	HOM03D000538
GO:0016051	IEA	PLAZA Homology	carbohydrate biosynthetic process	HOM03D000538
GO:0033692	IEA	PLAZA Homology	cellular polysaccharide biosynthetic process	HOM03D000538
GO:0015980	IEA	PLAZA Homology	energy derivation by oxidation of organic compounds	HOM03D000538
GO:0005976	IEA	PLAZA Homology	polysaccharide metabolic process	HOM03D000538
GO:0005977	IEA	PLAZA Homology	glycogen metabolic process	HOM03D000538
GO:0006112	IEA	PLAZA Homology	energy reserve metabolic process	HOM03D000538
GO:0044723	IEA	PLAZA Homology	single-organism carbohydrate metabolic process	HOM03D000538
GO:0034637	IEA	PLAZA Homology	cellular carbohydrate biosynthetic process	HOM03D000538
GO:0009250	IEA	PLAZA Homology	glucan biosynthetic process	HOM03D000538
GO:0000271	IEA	PLAZA Homology	polysaccharide biosynthetic process	HOM03D000538
GO:0044042	IEA	PLAZA Homology	glucan metabolic process	HOM03D000538

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016779	IEA	Genome Project	nucleotidyltransferase activity
GO:0008878	IEA	InterPro	glucose-1-phosphate adenylyltransferase activity
GO:0070566	IEA	PLAZA Homology	adenylyltransferase activity	HOM03D000538

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009501	ISO	PLAZA Integrative Orthology	amyloplast	OS09G12660
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	OS08G25734
GO:0030931	ISO	PLAZA Integrative Orthology	heterotetrameric ADPG pyrophosphorylase complex	AT5G48300
GO:0048046	ISO	PLAZA Integrative Orthology	apoplast	AT5G48300
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT5G48300
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT5G48300

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR005836	ADP-glucose pyrophosphorylase, conserved site
IPR005835	Nucleotidyl transferase
IPR011831	Glucose-1-phosphate adenylyltransferase
IPR011004	Trimeric LpxA-like

Mapman id	Description
2.1.2.1	major CHO metabolism.synthesis.starch.AGPase

No SignalP domains detected for this gene.