PLAZA 3.0 Dicots gene overview : AL7G30230

Gene: AL7G30230 (Arabidopsis lyrata)

Overview

Gene Identifier: AL7G30230
Transcript Identifier: AL7G30230.1
Gene Type: Coding gene
Location: scaffold_7 : 14279366-14281474 : negative

Family

Gene family: HOM03D001354
(115 genes in 29 species)
specific family
Subfamily: ORTHO03D009338
(28 genes in 25 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): protein ligase RHF1A

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	493488
GeneName	g493488
id	PAC:16066411

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055046	ISO	PLAZA Integrative Orthology	microgametogenesis	AT4G14220
GO:0051726	ISO	PLAZA Integrative Orthology	regulation of cell cycle	AT4G14220
GO:0016567	ISO	PLAZA Integrative Orthology	protein ubiquitination	AT4G14220
GO:0009561	ISO	PLAZA Integrative Orthology	megagametogenesis	AT4G14220
GO:0010498	ISO	PLAZA Integrative Orthology	proteasomal protein catabolic process	AT4G14220

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004842	ISO	PLAZA Integrative Orthology	ubiquitin-protein ligase activity	AT4G14220

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT4G14220

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.