PLAZA 3.0 Dicots gene overview : AL7G06960

Gene: AL7G06960 (Arabidopsis lyrata)

Overview

Gene Identifier: AL7G06960
Transcript Identifier: AL7G06960.1
Gene Type: Coding gene
Location: scaffold_7 : 2951934-2955127 : negative

Family

Gene family: HOM03D000173
(589 genes in 31 species)
specific family
Subfamily: ORTHO03D000175
(137 genes in 31 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Polyadenylate-binding protein, cytoplasmic and nuclear

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	888668
GeneName	g888668
id	PAC:16037506

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009651	ISO	PLAZA Integrative Orthology	response to salt stress	AT4G34110
GO:0060211	ISO	PLAZA Integrative Orthology	regulation of nuclear-transcribed mRNA poly(A) tail shortening	AT4G34110
GO:1900151	ISO	PLAZA Integrative Orthology	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	AT4G34110
GO:0006446	ISO	PLAZA Integrative Orthology	regulation of translational initiation	AT4G34110
GO:0046686	ISO	PLAZA Tree-based Orthology	response to cadmium ion	AT1G49760

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:0003723	IEA	Genome Project	RNA binding
GO:0000166	IEA	InterPro	nucleotide binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT4G34110 AT1G49760
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000173
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000173
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000173
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000173

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT4G34110 AT1G49760

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003954	RNA recognition motif domain, eukaryote
IPR012677	Nucleotide-binding, alpha-beta plait
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein
IPR000504	RNA recognition motif domain
IPR006515	Polyadenylate binding protein, human types 1, 2, 3, 4

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.