Gene: AL7G06960 (Arabidopsis lyrata)

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Gene Identifier
AL7G06960
Transcript Identifier
AL7G06960.1
Gene Type
Coding gene
Location
scaffold_7 : 2951934-2955127 : negative

Family

Gene family
HOM03D000173
(589 genes in 31 species)
specific family
Subfamily
ORTHO03D000175
(137 genes in 31 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Polyadenylate-binding protein, cytoplasmic and nuclear
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid888668
GeneNameg888668
idPAC:16037506

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT4G34110
GO:0060211ISOPLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA poly(A) tail shorteningAT4G34110
GO:1900151ISOPLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decayAT4G34110
GO:0006446ISOPLAZA Integrative Orthologyregulation of translational initiationAT4G34110
GO:0046686ISOPLAZA Tree-based Orthologyresponse to cadmium ionAT1G49760

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676IEAGenome Projectnucleic acid binding
GO:0003723IEAGenome ProjectRNA binding
GO:0000166IEAInterPronucleotide binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT4G34110 AT1G49760
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000173
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000173
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000173
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000173

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT4G34110 AT1G49760

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003954RNA recognition motif domain, eukaryote
IPR012677Nucleotide-binding, alpha-beta plait
IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
IPR000504RNA recognition motif domain
IPR006515Polyadenylate binding protein, human types 1, 2, 3, 4

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.