Gene: AL6G30840 (Arabidopsis lyrata)

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Gene Identifier
AL6G30840
Transcript Identifier
AL6G30840.1
Gene Type
Coding gene
Location
scaffold_6 : 18706104-18708913 : positive

Family

Gene family
HOM03D001750
(94 genes in 30 species)
specific family
Subfamily
ORTHO03D000897
(63 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine)
Putative E3 ubiquitin-protein ligase ORTHRUS 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid489762
GeneNameg489762
idPAC:16049163

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010228ISOPLAZA Tree-based Orthologyvegetative to reproductive phase transition of meristemAT5G39550
GO:0090309ISOPLAZA Tree-based Orthologypositive regulation of methylation-dependent chromatin silencingAT1G57820 AT1G66040 AT1G66050 AT5G39550
GO:0010424ISOPLAZA Tree-based OrthologyDNA methylation on cytosine within a CG sequenceAT1G57820 AT5G39550
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT1G57820 AT4G08590 AT1G66050 AT5G39550
GO:0051301ISOPLAZA Tree-based Orthologycell divisionAT1G57820
GO:0031508ISOPLAZA Tree-based Orthologycentromeric heterochromatin assemblyAT1G57820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042393IEAGenome Projecthistone binding
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0046872IEAInterPrometal ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT1G57820 AT4G08590 AT1G66040 AT1G66050 AT5G39550
GO:0010385ISOPLAZA Tree-based Orthologydouble-stranded methylated DNA bindingAT1G57820
GO:0003682ISOPLAZA Tree-based Orthologychromatin bindingAT1G57820
GO:0010429ISOPLAZA Tree-based Orthologymethyl-CpNpN bindingAT1G57820 AT5G39550
GO:0010428ISOPLAZA Tree-based Orthologymethyl-CpNpG bindingAT1G57820 AT5G39550
GO:0008327ISOPLAZA Tree-based Orthologymethyl-CpG bindingAT1G57820 AT5G39550

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT4G08590
GO:0005634ISOPLAZA Tree-based OrthologynucleusAT1G57820 AT1G66040 AT1G66050 AT5G39550
GO:0010369ISOPLAZA Tree-based OrthologychromocenterAT1G57820

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015947PUA-like domain
IPR001841Zinc finger, RING-type
IPR003105SRA-YDG
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR018957Zinc finger, C3HC4 RING-type

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.