PLAZA 3.0 Dicots gene overview : AL6G24200

Gene: AL6G24200 (Arabidopsis lyrata)

Overview

Gene Identifier: AL6G24200
Transcript Identifier: AL6G24200.1
Gene Type: Coding gene
Location: scaffold_6 : 10500312-10501765 : negative

Family

Gene family: HOM03D000380
(324 genes in 31 species)
specific family
Subfamily: ORTHO03D005138
(34 genes in 26 species)
specific family

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Descriptions

Description (AnnoMine): Calcineurin B-like protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	326713
GeneName	g326713
id	PAC:16055255

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042539	ISO	PLAZA Integrative Orthology	hypotonic salinity response	AT5G24270
GO:0030007	ISO	PLAZA Integrative Orthology	cellular potassium ion homeostasis	AT5G24270
GO:0005513	ISO	PLAZA Integrative Orthology	detection of calcium ion	AT5G24270

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005509	IEA	InterPro	calcium ion binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G24270
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000380
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000380

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT5G24270

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002048	EF-hand domain
IPR011992	EF-hand domain pair
IPR001125	Recoverin like

Mapman id	Description
30.3	signalling.calcium

No SignalP domains detected for this gene.