Gene: AL6G22390 (Arabidopsis lyrata)

Overview top

Gene Identifier
AL6G22390
Transcript Identifier
AL6G22390.1
Gene Type
Coding gene
Location
scaffold_6 : 9524937-9531008 : positive

Family

Gene family
HOM03D001636
(100 genes in 30 species)
specific family
Subfamily
ORTHO03D007173
(31 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Chromodomain-helicase-DNA-binding protein Mi-2 homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid489125
GeneNameg489125
idPAC:16037750

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114IEAGenome Projectoxidation-reduction process
GO:0045893ISOPLAZA Tree-based Orthologypositive regulation of transcription, DNA-dependentAT5G35210
GO:0010019ISOPLAZA Tree-based Orthologychloroplast-nucleus signaling pathwayAT5G35210

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0047134IEAGenome Projectprotein-disulfide reductase activity
GO:0008270IEAInterProzinc ion binding
GO:0000979ISOPLAZA Tree-based OrthologyRNA polymerase II core promoter sequence-specific DNA bindingAT5G35210

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009707ISOPLAZA Tree-based Orthologychloroplast outer membraneAT5G35210
GO:0005634ISOPLAZA Tree-based OrthologynucleusAT5G35210

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001965Zinc finger, PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR011011Zinc finger, FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR004022DDT domain
IPR018501DDT domain superfamily
IPR018500DDT domain, subgroup

Mapman id Description
27.3.67RNA.regulation of transcription.putative transcription regulator
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBDDT