PLAZA 3.0 Dicots gene overview : AL6G21610

Gene: AL6G21610 (Arabidopsis lyrata)

Overview

Gene Identifier: AL6G21610
Transcript Identifier: AL6G21610.1
Gene Type: Coding gene
Location: scaffold_6 : 9143964-9146071 : positive

Family

Gene family: HOM03D001354
(115 genes in 29 species)
specific family
Subfamily: ORTHO03D005988
(33 genes in 26 species)
specific family

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Descriptions

Description (AnnoMine): protein ligase RHF2A

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	489047
GeneName	g489047
id	PAC:16053197

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055046	ISO	PLAZA Integrative Orthology	microgametogenesis	AT5G22000
GO:0051603	ISO	PLAZA Integrative Orthology	proteolysis involved in cellular protein catabolic process	AT5G22000
GO:0051726	ISO	PLAZA Integrative Orthology	regulation of cell cycle	AT5G22000
GO:0009561	ISO	PLAZA Integrative Orthology	megagametogenesis	AT5G22000

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G22000

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.