PLAZA 3.0 Dicots gene overview : AL6G17370

Gene: AL6G17370 (Arabidopsis lyrata)

Overview

Gene Identifier: AL6G17370
Transcript Identifier: AL6G17370.1
Gene Type: Coding gene
Location: scaffold_6 : 7225947-7226974 : positive

Family

Gene family: HOM03D000061
(1331 genes in 31 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine): U-box domain-containing protein 11

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	941258
GeneName	g941258
id	PAC:16062562

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016567	IEA	PLAZA Homology	protein ubiquitination	HOM03D000061
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03D000061
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03D000061
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03D000061
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000061
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000061
GO:0032446	IEA	PLAZA Homology	protein modification by small protein conjugation	HOM03D000061
GO:0070647	IEA	PLAZA Homology	protein modification by small protein conjugation or removal	HOM03D000061
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03D000061
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000061
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03D000061
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03D000061
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03D000061
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03D000061

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	Genome Project	protein binding
GO:0005488	IEA	InterPro	binding
GO:0004842	IEA	PLAZA Homology	ubiquitin-protein ligase activity	HOM03D000061
GO:0016874	IEA	PLAZA Homology	ligase activity	HOM03D000061
GO:0019787	IEA	PLAZA Homology	small conjugating protein ligase activity	HOM03D000061
GO:0016881	IEA	PLAZA Homology	acid-amino acid ligase activity	HOM03D000061
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000061

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0000151	IEA	PLAZA Homology	ubiquitin ligase complex	HOM03D000061
GO:0005622	IEA	PLAZA Homology	intracellular	HOM03D000061
GO:0032991	IEA	PLAZA Homology	macromolecular complex	HOM03D000061
GO:1902494	IEA	PLAZA Homology	catalytic complex	HOM03D000061
GO:0005623	IEA	PLAZA Homology	cell	HOM03D000061
GO:0043234	IEA	PLAZA Homology	protein complex	HOM03D000061
GO:0044464	IEA	PLAZA Homology	cell part	HOM03D000061
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03D000061

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000225	Armadillo
IPR011989	Armadillo-like helical
IPR016024	Armadillo-type fold

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.