Gene: AL6G10100 (Arabidopsis lyrata)

Overview top

Gene Identifier
AL6G10100
Transcript Identifier
AL6G10100.1
Gene Type
Coding gene
Location
scaffold_6 : 4136956-4137366 : negative

Family

Gene family
HOM03D000248
(436 genes in 31 species)
specific family
Subfamily
ORTHO03D000156
(146 genes in 26 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Histone H3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid940507
GeneNameg940507
idPAC:16047367

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000248
GO:0071824IEAPLAZA Homologyprotein-DNA complex subunit organizationHOM03D000248
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000248
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03D000248
GO:0006325IEAPLAZA Homologychromatin organizationHOM03D000248
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03D000248
GO:0006323IEAPLAZA HomologyDNA packagingHOM03D000248
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03D000248
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000248
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03D000248
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000248
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000248
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03D000248
GO:0071103IEAPLAZA HomologyDNA conformation changeHOM03D000248
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03D000248
GO:0065004IEAPLAZA Homologyprotein-DNA complex assemblyHOM03D000248
GO:0006333IEAPLAZA Homologychromatin assembly or disassemblyHOM03D000248
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000248
GO:0016043IEAPLAZA Homologycellular component organizationHOM03D000248
GO:0051276IEAPLAZA Homologychromosome organizationHOM03D000248
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000248
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000248
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000248
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03D000248
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03D000248
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03D000248
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03D000248
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03D000248
GO:0044699IEAPLAZA Homologysingle-organism processHOM03D000248
GO:0006259IEAPLAZA HomologyDNA metabolic processHOM03D000248
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000248
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03D000248

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0046982IEAInterProprotein heterodimerization activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G09200
GO:0046983IEAPLAZA Homologyprotein dimerization activityHOM03D000248
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000248

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786IEAGenome Projectnucleosome
GO:0005622IEAPLAZA HomologyintracellularHOM03D000248
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03D000248
GO:0032993IEAPLAZA Homologyprotein-DNA complexHOM03D000248
GO:0043226IEAPLAZA HomologyorganelleHOM03D000248
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03D000248
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03D000248
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000248
GO:0000785IEAPLAZA HomologychromatinHOM03D000248
GO:0044815IEAPLAZA HomologyDNA packaging complexHOM03D000248
GO:0005694IEAPLAZA HomologychromosomeHOM03D000248
GO:0043234IEAPLAZA Homologyprotein complexHOM03D000248
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03D000248
GO:0044464IEAPLAZA Homologycell partHOM03D000248
GO:0044427IEAPLAZA Homologychromosomal partHOM03D000248
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000248
GO:0044422IEAPLAZA Homologyorganelle partHOM03D000248
GO:0005623IEAPLAZA HomologycellHOM03D000248
GO:0044446IEAPLAZA Homologyintracellular organelle partHOM03D000248

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000164Histone H3
IPR007125Histone core
IPR009072Histone-fold

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.