Gene: AL6G10090 (Arabidopsis lyrata)

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Gene Identifier
AL6G10090
Transcript Identifier
AL6G10090.1
Gene Type
Coding gene
Location
scaffold_6 : 4135690-4136610 : positive

Family

Gene family
HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily
ORTHO03D027656
(5 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
H2 finger protein
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid350245
GeneNameg350245
idPAC:16051327

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0051865ISOPLAZA Integrative Orthologyprotein autoubiquitinationAT5G10380
GO:0043068ISOPLAZA Integrative Orthologypositive regulation of programmed cell deathAT5G10380
GO:0009617ISOPLAZA Integrative Orthologyresponse to bacteriumAT5G10380
GO:0002238ISOPLAZA Integrative Orthologyresponse to molecule of fungal originAT5G10380
GO:0010200ISOPLAZA Integrative Orthologyresponse to chitinAT5G10380
GO:0012501ISOPLAZA Integrative Orthologyprogrammed cell deathAT5G10380
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT5G10380

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT5G10380
GO:0043169IEAPLAZA Homologycation bindingHOM03D000017
GO:0005488IEAPLAZA HomologybindingHOM03D000017
GO:0043167IEAPLAZA Homologyion bindingHOM03D000017
GO:0046914IEAPLAZA Homologytransition metal ion bindingHOM03D000017
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D000017

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G10380

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001841Zinc finger, RING-type

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.